fileListAssay: List files for a project

In paodan/prideDownloader:

Description

List files for a project

Usage

fileListAssay(assayAccession = c("22134", "22135"))

Arguments

assayAccession

character, a vector of project accessions. The default is c("PXD000001", "PXD000002")

Value

a data.frame of the details of searched entries, including: projectAccession (string, optional): , assayAccession (string, optional): , fileType (string, optional) = ['RESULT' or 'PEAK' or 'SEARCH' or 'RAW' or 'QUANT' or 'GEL' or 'FASTA' or 'SPECTRUM_LIBRARY' or 'MS_IMAGE_DATA' or 'OPTICAL_IMAGE' or 'OTHER']: , fileSource (string, optional): SUBMITTED (part of the original dataset) or GENERATED (added to the submission by PRIDE), fileSize (integer, optional): size in bytes, fileName (string, optional): the name of the file, downloadLink (string, optional): public FTP download link, asperaDownloadLink (string, optional): public Aspera download link, fileExtension: file extension, fileSizeGB: file size in GB.

Examples

{
## Not run: 
# Search for one accession
fileListAssay("22134")

# Search for two accessions
fileListAssay(c("22134", "22135"))

## End(Not run)
}

paodan/prideDownloader documentation built on May 6, 2019, 11:44 a.m.