assayList: The assay entries information in the projects
In paodan/prideDownloader:

Description Usage Arguments Value Examples

View source: R/assayList.R

The assay entries information in the projects

1	assayList(projectAccession, accessionRownames = TRUE)

projectAccession

character, a project accession number for example: PXD000001.

a data.frame of the details of assay entries information, including: projectAccession (string, optional): the project this assay belongs to, assayAccession (string, optional): the accession assigned to the assay, title (string, optional): the title give to the assay by the submitter, shortLabel (string, optional): the short label give to the assay by the submitter, species (array[string], optional): the species reported for this assay, sampleDetails (array[string], optional): sample details reported for this assay ptmNames (array[string], optional): reported modifications, instrumentNames (array[string], optional): reported instrument information, keywords (string, optional): additional keywords added to this assay, experimentalFactor (string, optional): experimental factors reported for this assay, proteinCount (integer, optional): number of proteins in this assay, peptideCount (integer, optional): number of peptides in this assay, uniquePeptideCount (integer, optional): number of unique peptides in this assay, identifiedSpectrumCount (integer, optional): number of identified spectra in this assay, totalSpectrumCount (integer, optional): total number of spectra in this assay, ms2Annotation (boolean, optional): flag if ms level 2 annotation is available, chromatogram (boolean, optional): flag to indicate if a chromatogram is available, softwares (array[string], optional): software used for the data/result generation, diseases (array[string], optional): disease annotation provided for this assay (if applicable), quantMethods (array[string], optional): quantification methods used, contacts (array[ContactDetail], optional): contact persons, usually the submitter of the dataset,

{
## Not run: 
# Search for one project accession
assayList("PXD000001")

# Search for two project accessions
assayList(c("PXD000001", "PXD008959"))

## End(Not run)
}