minCountFilt: minCountFilt methods

Description Usage Arguments Details Author(s) Examples

Description

filter on minCountFilt snps

Usage

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minCountFilt(x, ...)

## S4 method for signature 'ASEset'
minCountFilt(
  x,
  strand = "*",
  threshold.counts = 1,
  sum = "all",
  replace.with = "zero",
  return.class = "ASEset"
)

Arguments

x

ASEset object

...

internal param

strand

strand to infer from

threshold.counts

cutoff for read counts (see details)

sum

'each' or 'all'

replace.with

only option 'zero'

return.class

'ASEset', 'array' or 'matrix'

Details

Description info here

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

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#load example data
data(ASEset)
a <- ASEset

minCountFilt(a)

pappewaio/AllelicImbalance documentation built on April 11, 2020, 2:58 a.m.