Man pages for pasturm/TofDaqR
R Interface to the TOFWERK TofDaq API
| AddAttributeDouble | Attaches a numeric attribute to the current HDF5 file. |
| AddAttributeInt | Attaches an integer attribute to the current HDF5 file. |
| AddAttributeString | Attaches a string attribute to the current HDF5 file. |
| AddLogEntry | Adds an entry to the acquisition log. |
| AddUserData | Stores (asynchronous) user supplied data. |
| AddUserDataMultiRow | Stores (asynchronous) user supplied data. |
| API-documentation | TofDaq API documentation |
| AutoSetupDaqDevice | Auto setup routine for the DAQ device. |
| ChangePeakTable | Changes the PeakTable and recomputes the PeakData. |
| ChangePeakTableFromFile | Changes the PeakTable and recomputes the PeakData. |
| CleanupDll | Deinitializes the TofDaqDll.dll. |
| CloseAll | Closes all open HDF5 files. |
| CloseH5 | Closes an open HDF5 file. |
| CloseTofDaqRec | Closes the TofDaq recorder application. |
| ConfigureForSingleIonMeasurement | Configures TofDaq recorder for single ion measurements. |
| ConfigVarNbrMemories | Enables and configures the "variable NbrMemories" feature. |
| ContinueAcquisition | Signals to the TofDaq recorder to continue an acquisition. |
| DaqActive | Checks if TofDaq recorder is currently acquiring data. |
| DecodeEventList | Decodes an event list. |
| DecodeEventListThreshold | Decodes an event list using thresholding. |
| DecomposeMass | Calculates possible sum formulas from a list of fragment... |
| DecomposeMass2 | Calculates possible sum formulas from a list of fragment... |
| DeleteAttributeInH5 | Deletes an attribute. |
| DioStartDelayActive | Checks if TofDaq recorder has received a start signal. |
| EvalMultiPeak | Calculates the y-axis values for a given set of multi-peak... |
| EvalResolution | Evaluates the fitted resolution function for given mass... |
| EvalSinglePeak | Calculates the y-axis values for a given set of peak... |
| EventList2TofSpec | Converts events of an event list into a spectrum. |
| FindTpsIp | Gets IP address of TPS2. |
| FitResolution | Fits mass versus resolution values to an empirical function. |
| FitSinglePeak | Performs a peak fit. |
| FitSinglePeak2 | Performs a peak fit (Initial values as vector). |
| FitTofDataSinglePeak | Wrapper function for FitSinglePeak(). |
| GetAcquisitionLogFromH5 | Reads a single acquisition log entry. |
| GetBufTimeFromH5 | Single buf timestamp from the data file. |
| GetBufTimeFromShMem | Time stamp for a given buf and write. |
| GetBufWriteProfile2FromH5 | Gets a linked buf/write profile. |
| GetBufWriteProfileFromH5 | Gets a linked buf/write profile. |
| GetDaqParameter | Gets a single parameter as a string. |
| GetDaqParameterBool | Gets a single boolean parameter. |
| GetDaqParameterBoolRef | Gets a single boolean parameter. |
| GetDaqParameterDouble | Gets a single double parameter. |
| GetDaqParameterDoubleRef | Gets a single double parameter. |
| GetDaqParameterFloat | Gets a single float parameter. |
| GetDaqParameterFloatRef | Gets a single float parameter. |
| GetDaqParameterInt | Gets a single integer parameter. |
| GetDaqParameterInt64 | Gets a single int64 parameter as a string. |
| GetDaqParameterInt64Ref | Gets a single int64 parameter as a string. |
| GetDaqParameterIntRef | Gets a single integer parameter. |
| GetDaqParameterStringRef | Gets a single string parameter. |
| GetDescriptor | Gets various information about the active acquisition. |
| GetDllVersion | Gets the version number of the TofDaq API. |
| GetDoubleAttributeFromH5 | Reads a double attribute from the HDF5 file. |
| GetEventListSpectrumFromH5 | Reads the events of a spectrum from HDF5 data file. |
| GetFloatAttributeFromH5 | Reads a float attribute from the HDF5 file. |
| GetH5Descriptor | Descriptor structure of Tofwerk HDF5 data file. |
| GetInt64AttributeFromH5 | Reads a 64-bit integer attribute from the HDF5 file. |
| GetIntAttributeFromH5 | Reads an integer attribute from the HDF5 file. |
| GetIsotopePattern | Calculates the isotope pattern of a molecule. |
| GetIsotopePattern2 | Calculates the isotope pattern of a molecule. |
| GetMassCalib | Returns information about the current mass calibration. |
| GetMassCalib2 | Returns information about the current mass calibration. |
| GetMassCalib2Ex | Returns information about the current mass calibration. |
| GetMassCalibEx | Returns information about the current mass calibration. |
| GetMassCalibInfo | Gets the description and number of parameters of the... |
| GetMoleculeMass | Calculates the mass/charge ratio of a molecule. |
| GetPeakData | Gets data stored in /PeakData/PeakData from HDF5 data file. |
| GetPeakData2 | Gets data stored in /PeakData2/PeakData from HDF5 data file. |
| GetPeakParameters | Gets parameters for a given peak. |
| GetPeakParametersFromH5 | Peak parameters from HDF5 data file. |
| GetRegUserDataDesc | Reads the element descriptions of a registered data source. |
| GetRegUserDataFromH5 | Reads entries from a registered data source dataset. |
| GetRegUserDataSources | Queries names, dimensions and types of all registered data... |
| GetRegUserDataSourcesFromH5 | Lists all registered user datasets available in the data... |
| GetSegmentProfile2FromH5 | Segment profile from HDF5 data file. |
| GetSegmentProfileFromH5 | Segment profile from HDF5 data file. |
| GetSegmentProfileFromShMem | Segment profile for a given peak and buf index from shared... |
| GetSegmentProfileFromShMem2 | Segment profile for a given peak and buf index from shared... |
| GetSpecXaxisFromH5 | x-axis values of mass spectrum. |
| GetSpecXaxisFromShMem | X-axis values of mass spectrum. |
| GetStickSpectrum2FromH5 | Single (averaged) stick spectrum from HDF5 data file. |
| GetStickSpectrumFromH5 | Single (averaged) stick spectrum from HDF5 data file. |
| GetStickSpectrumFromShMem | Single stick spectrum from shared memory. |
| GetStickSpectrumFromShMem2 | Single stick spectrum from shared memory. |
| GetStringAttributeFromH5 | Reads a string attribute from the HDF5 file. |
| GetSumSpectrumFromH5 | Sum spectrum from HDF5 data file. |
| GetSumSpectrumFromShMem | Sum spectrum from shared memory. |
| GetSumSpectrumFromShMem2 | Sum spectrum from shared memory. |
| GetTimeout | Gets the timeout. |
| GetTimingData | Gets data stored in /Timing/BufTimes from HDF5 data file. |
| GetTofData | Gets data stored in /FullSpectra/TofData from HDF5 data file. |
| GetTofData2 | Gets data stored in /FullSpectra2/TofData from HDF5 data... |
| GetTofDataSinglePeak | Gets TofData of a single peak from a HDF5 data file. |
| GetTofSpectrum2FromH5 | Single (averaged) TOF spectrum from HDF5 data file. |
| GetTofSpectrumFromH5 | Single (averaged) TOF spectrum from HDF5 data file. |
| GetTofSpectrumFromShMem | Single TOF spectrum from shared memory. |
| GetTofSpectrumFromShMem2 | Single TOF spectrum from shared memory. |
| GetUint64AttributeFromH5 | Reads an unsigned 64-bit integer attribute from the HDF5... |
| GetUintAttributeFromH5 | Reads an unsigned integer attribute from the HDF5 file. |
| GetUserDataFromH5 | Reads user data from the HDF5 file. |
| H5AddLogEntry | Adds an entry to an existing data file. |
| H5AddUserDataMultiRow | Adds user data to a data file. |
| H5GetMassCalibPar | Gets mass calibration parameters from the data file. |
| H5SetMassCalib | Changes the global mass calibration in the data file. |
| H5SetMassCalib2 | Changes the global mass calibration in the data file. |
| H5SetMassCalib2Ex | Changes the global mass calibration in the data file. |
| H5SetMassCalibDynamic | Stores dynamic mass calibration for a given spectrum in the... |
| H5SetMassCalibEx | Changes the global mass calibration in the data file. |
| InitializeDaqDevice | Initializes the DAQ board. |
| InitializeDll | Initializes the TofDaqDll.dll. |
| IssueDio4Pulse | Issues a TTL pulse on the digital output line 4. |
| KeepFileOpen | Allows to keep the data file open at the end of an... |
| KeepSharedMemMapped | Keeps the shared memory acquisition buffers mapped. |
| LoadIniFile | Loads a configuration file. |
| ManualContinueNeeded | Indicates if the TofDaq recorder expects a continue event. |
| Mass2Tof | Converts from mass/charge to sample index. |
| MassCalibrate | Performs a mass calibration. |
| MatchSpectra | Checks two spectra for similarity. |
| MultiPeakFit | Performs a multi-peak fit. |
| OnDemandMassCalibration | Arms/executes on demand mass calibration. |
| QueryRegUserDataSize | Queries the size of a registered data source. |
| ReadRegUserData | Reads the current values of a registered data source. |
| RegisterUserDataBuf | Registers a data source to store (synchronous) user supplied... |
| RegisterUserDataNoStore | Registers a data source for (synchronous) user supplied data. |
| RegisterUserDataWrite | Registers a data source to store (synchronous) user supplied... |
| ReleaseSharedMemory | Manually releases the shared memory acquisition buffers. |
| SaturationWarning | Checks if the signal is saturating the DAQ system. |
| SaveIniFile | Saves the current configuration (*.ini) to disk. |
| SaveMassTableToFile | Saves the current peak parameters to a file. |
| SendDioStartSignal | Sends a digital start signal. |
| SetDaqParameter | Sets a single parameter. |
| SetDaqParameterBool | Sets a single parameter with a boolean value. |
| SetDaqParameterDouble | Sets a single parameter with a double value. |
| SetDaqParameterFloat | Sets a single parameter with a float value. |
| SetDaqParameterInt | Sets a single parameter with an integer value. |
| SetDaqParameterInt64 | Sets a single parameter with an int64 value. |
| SetDio4State | Switches the digital output line 4 between states. |
| SetDoubleAttributeInH5 | Writes a double attribute to the HDF5 file. |
| SetFloatAttributeInH5 | Writes a float attribute to the HDF5 file. |
| SetInt64AttributeInH5 | Writes an int64 attribute to the HDF5 file. |
| SetIntAttributeInH5 | Writes an integer attribute to the HDF5 file. |
| SetMassCalib | Configures the mass calibration that will be used for the... |
| SetMassCalib2 | Configures the mass calibration that will be used for the... |
| SetMassCalib2Ex | Configures the mass calibration that will be used for the... |
| SetMassCalibEx | Configures the mass calibration that will be used for the... |
| SetStringAttributeInH5 | Writes a string attribute to the HDF5 file. |
| SetTimeout | Sets the timeout. |
| SetUint64AttributeInH5 | Writes an unsigned int64 attribute to the HDF5 file. |
| SetUintAttributeInH5 | Writes an unsigned integer attribute to the HDF5 file. |
| ShowConfigWindow | Shows the TofDaq recorder configuration windows. |
| SiCleanup | Cleans up the state in the DLL. |
| SiEvalPhd | Evaluates the fitted single ion distribution. |
| SiFitPhd | Fits a (slightly modified) log-normal distribution to the... |
| SiFitRateFromPhd | Fits an event rate to a multi-ion histogram. |
| SiGetHistogram | Gets a histogram of the single ion intensities. |
| SiGetSumHistogram | Gets a sum histogram of the single ion intensities. |
| SiInitializeHistograms | Initializes the single ion histogramming. |
| SiProcessSpectrum | Processes a spectrum. |
| SiProcessSpectrumFromShMem | Processes a spectrum taken from shared memory. |
| SiResetHistograms | Resets all histograms and spectrum counters to zero. |
| SiSetProcessingOptions | Sets processing options for each spectrum type. |
| StartAcquisition | Starts an acquisition. |
| StopAcquisition | Stops the current acquisition. |
| Tof2Mass | Converts from sample index to mass/charge. |
| TofDaqR | TofDaqR: R Interface to the TOFWERK TofDaq API. |
| TofDaqRunning | Checks if TofDaq recorder application is running. |
| Tps1rc | TPS1 RC codes and names. |
| TpsChangeIonMode | Changes ion mode and sets target values to 0. |
| TpsConnect | Connects to a remote control enabled TPSController software. |
| TpsConnect2 | Connects to a local or remote TPS. |
| TpsDisconnect | Disconnects from a remote control enabled TPSController... |
| TpsGetActiveFilament | Gets the currently active filament. |
| TpsGetLastSetValue | Gets the last reported "last set" value for a given module. |
| TpsGetModuleCodes | Gets the module codes of all controllable TPS modules. |
| TpsGetModuleLimits | Gets the limits for a given TPS module. |
| TpsGetModuleProperties | Gets capabilities and label for a given RC code. |
| TpsGetMonitorValue | Gets the last reported monitor value for a given module. |
| TpsGetNbrModules | Gets the number of controllable modules. |
| TpsGetNmtState | Queries the NMT state of a CANopen node. |
| TpsGetStatus | Gets the status of the TPS. |
| TpsGetTargetValue | Gets the last reported target value for a given module. |
| TpsInitialize | Initializes TPS. |
| TpsLoadSetFile | Loads a TPS set file and sets all values. |
| TpsLoadSetFile2 | Loads a TPS set file and sets some values. |
| TpsSaveSetFile | Saves the current TPS settings to a file. |
| TpsSaveSetFileRc | Saves TPS set values with a RC code to a file. |
| TpsSetActiveFilament | Sets the active filament. |
| TpsSetAllVoltages | Sets all voltages. |
| TpsSetNmtCmd | Sets the NMT state of a CANopen node. |
| TpsSetTargetValue | Sets the target value for a given module. |
| TpsShutdown | Shuts down TPS. |
| UnregisterUserData | Unregisters a data source. |
| UpdateUserData | Updates the values for a registered data source. |
| WaitForEndOfAcquisition | Waits for the end of the current acquisition. |
| WaitForExclusiveFileAccess | Checks whether a file can be opened with exclusive access... |
| WaitForNewData | Waits for new data. |
| WaitingForDioStartSignal | Checks if TofDaq recorder is waiting for a start signal. |
| WriteNetCdfTimeSeriesFile | Writes a ANDI chromatography file. |
