assign_centers: assign centroid values to active embedding
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
View source: R/segment_image.R
assign_centers R Documentation
assign centroid values to active embedding
Description
assign centroid values to active embedding
Usage
assign_centers(vesalius_assay, clusters, kcenters, dimensions, ratio = NULL)
Arguments
vesalius_assay
a vesalius assy object
clusters
data.frame containing cluster values
kcenters
matrix containing centroid values for each dimension
dimensions
vector (nummeric / int) describin which latent space
ratio
if used in the context of super pixel - spatial ration
dimensiuons shouls be used.
Value
matrix for the active embedding usiong color segementation
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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View source: R/segment_image.R
| assign_centers | R Documentation |
assign centroid values to active embedding
Description
assign centroid values to active embedding
Usage
assign_centers(vesalius_assay, clusters, kcenters, dimensions, ratio = NULL)
Arguments
vesalius_assay |
a vesalius assy object |
clusters |
data.frame containing cluster values |
kcenters |
matrix containing centroid values for each dimension |
dimensions |
vector (nummeric / int) describin which latent space |
ratio |
if used in the context of super pixel - spatial ration dimensiuons shouls be used. |
Value
matrix for the active embedding usiong color segementation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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