check_coordinates: check if coordinates are of the correct type and format and...

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

check if coordinates are of the correct type and format and adjust coordinate value to remove white edge space

Description

check if coordinates are of the correct type and format and adjust coordinate value to remove white edge space

Usage

check_coordinates(coordinates, assay, verbose)

Arguments

coordinates	coordinate data
assay	string - assay name
verbose	logical if progress message should be printed

Details

adjusts coordinates by either snapping coordinates to origin or min max normalisation of coordinates. Might add polar for future tests.

Value

coordinates data.frame or error

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.