build_mapped_assay: Build a new vesalius_assay object using mapping information

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

Build a new vesalius_assay object using mapping information

Description

Build a new vesalius_assay object using mapping information

Usage

build_mapped_assay(mapped, seed_assay, query_assay, meta_labels, jitter = 0)

Arguments

mapped	mapping results (see output of point_mapping)
seed_assay	vesalius_assay object used as reference
query_assay	vesalius_assay that was mapped onto the reference
meta_labels	character - name of column to be transfered to new object
jitter	numeric - how much coordiate jitter should be added to the coordinates to avoid duplication. If 0, no jitter will be added.

Details

This function will only return a vesalius_assay with new coordinates and mapping inforation such as cost. The rest will remain the same. We are only transfering coordinates here. No integration.

Value

vesalius_assay object with new coordinates.

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.