check_barcodes: checking overlap between barcodes in counts and coordinates
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
View source: R/sanity_checks.R
check_barcodes R Documentation
checking overlap between barcodes in counts and coordinates
Description
checking overlap between barcodes in counts and coordinates
Usage
check_barcodes(mat_barcodes, coordinates, throw = TRUE)
Arguments
mat_barcodes
character vector containing barcode names in matrix
(count matrix or embedding matrix)
coordinates
character vector containing barcode names in tile
data frame
throw
logical if warning should be thrown or not
Details
Will throw in a warning if the overlap is not perfect.
Value
overlapping location between counts and coordinates
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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View source: R/sanity_checks.R
| check_barcodes | R Documentation |
checking overlap between barcodes in counts and coordinates
Description
checking overlap between barcodes in counts and coordinates
Usage
check_barcodes(mat_barcodes, coordinates, throw = TRUE)
Arguments
mat_barcodes |
character vector containing barcode names in matrix (count matrix or embedding matrix) |
coordinates |
character vector containing barcode names in tile data frame |
throw |
logical if warning should be thrown or not |
Details
Will throw in a warning if the overlap is not perfect.
Value
overlapping location between counts and coordinates
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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