getUrl: the url of the gwas table

In paul-shannon/igvShiny: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

the url of the gwas table

Description

the url of the gwas table

Usage

## S4 method for signature 'GWASTrack'
getUrl(obj)

Arguments

obj	An object of class GWASTrack

Value

character

Examples

file <-
  # a local gwas file
  system.file(package = "igvShiny", "extdata", "gwas-5k.tsv.gz")
tbl.gwas <- read.table(file,
                       sep = "\t",
                       header = TRUE,
                       quote = "")
track <-
  GWASTrack(
    "gwas 5k",
    tbl.gwas,
    chrom.col = 12,
    pos.col = 13,
    pval.col = 28
  )
getUrl(track)

paul-shannon/igvShiny documentation built on Aug. 12, 2024, 7:41 p.m.