loadVcfTrack: load a VCF (variant) track provided as a Bioconductor...

In paul-shannon/igvShiny: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

load a VCF (variant) track provided as a Bioconductor VariantAnnotation object

Description

load a VCF (variant) track provided as a Bioconductor VariantAnnotation object

Usage

loadVcfTrack(session, id, trackName, vcfData, deleteTracksOfSameName = TRUE)

Arguments

session	an environment or list, provided and managed by shiny
id	character string, the html element id of this widget instance
trackName	character string
vcfData	VariantAnnotation object
deleteTracksOfSameName	logical, default TRUE

Value

nothing

Examples

library(igvShiny)
demo_app_file <-
  system.file(package = "igvShiny", "demos", "igvShinyDemo-withVCF.R")
if (interactive()) {
  shiny::runApp(demo_app_file)
}

paul-shannon/igvShiny documentation built on April 25, 2024, 7:38 a.m.