loadGwasTrack: load a GWAS (genome-wide association study) track provided as...

In paul-shannon/igvShiny: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

load a GWAS (genome-wide association study) track provided as a data.frame

Description

load a GWAS (genome-wide association study) track provided as a data.frame

Usage

loadGwasTrack(
  session,
  id,
  trackName,
  tbl.gwas,
  ymin = 0,
  ymax = 35,
  deleteTracksOfSameName = TRUE
)

Arguments

session	an environment or list, provided and managed by shiny
id	character string, the html element id of this widget instance
trackName	character string
tbl.gwas	data.frame, with at least "chrom" "start" "end" columns
ymin	numeric defaults to 0
ymax	numeric defaults to 35
deleteTracksOfSameName	logical, default TRUE

Value

nothing

Examples

library(igvShiny)
demo_app_file <-
  system.file(package = "igvShiny", "demos", "igvShinyDemo.R")
if (interactive()) {
  shiny::runApp(demo_app_file)
}

paul-shannon/igvShiny documentation built on Aug. 31, 2024, 9:32 a.m.