loadBamTrackFromLocalData: load GenomicAlignments data as an igv.js alignment track

In paul-shannon/igvShiny: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

load GenomicAlignments data as an igv.js alignment track

Description

load GenomicAlignments data as an igv.js alignment track

Usage

loadBamTrackFromLocalData(
  session,
  id,
  trackName,
  data,
  deleteTracksOfSameName = TRUE,
  displayMode = "EXPANDED"
)

Arguments

session	an environment or list, provided and managed by shiny
id	character string, the html element id of this widget instance
trackName	character string
data	GenomicAlignments object
deleteTracksOfSameName	logical, default TRUE
displayMode	character string, possible values are "EXPANDED"(default), "SQUISHED" or "COLLAPSED"

Value

nothing

Examples

library(igvShiny)
demo_app_file <-
  system.file(package = "igvShiny", "demos", "igvShinyDemo.R")
if (interactive()) {
  shiny::runApp(demo_app_file)
}

paul-shannon/igvShiny documentation built on April 25, 2024, 7:38 a.m.