loadCramTrackFromURL: load a cram track which, with index, is served up by http

In paul-shannon/igvShiny: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

load a cram track which, with index, is served up by http

Description

load a remote cram track

Usage

loadCramTrackFromURL(
  session,
  id,
  trackName,
  cramURL,
  indexURL,
  deleteTracksOfSameName = TRUE
)

Arguments

session	an environment or list, provided and managed by shiny
id	character string, the html element id of this widget instance
trackName	character string
cramURL	character string http url for the bam file, typically very large
indexURL	character string http url for the bam file index, typically small
deleteTracksOfSameName	logical, default TRUE

Value

nothing

Examples

library(igvShiny)
demo_app_file <-
  system.file(package = "igvShiny", "demos", "igvShinyDemo.R")
if (interactive()) {
  shiny::runApp(demo_app_file)
}

paul-shannon/igvShiny documentation built on Nov. 17, 2024, 11:58 p.m.