Man pages for pdiakumis/woofr
Helper R Functions for woof
| check_comparison_input | Check Comparison Input File |
| compare_purple_gene_files | Compare two PURPLE gene CNV files |
| get_circos | Get Manta Circos with FP/FN calls |
| guess_file_type | Guess Type of File |
| hrd_cmp | HRDetect/CHORD Comparison |
| lf | List Files in knitr kable |
| list_s3_objects | List AWS S3 Objects |
| manta_isec | Intersect two Manta VCF files |
| manta_isec_stats | Manta Comparison Metrics |
| merge_umccrise_outputs | Gather umccrise filepaths from two umccrise final directories... |
| multiqc_cmp | Compare MultiQC JSONs |
| pcgr_cmp | PCGR TSV Comparison |
| prep_manta_vcf | Prepare Manta VCF for Circos |
| qc_sum_cmp | umccrise QC Summary Comparison |
| read_manta_vcf | Read Manta VCF |
| read_purple_gene_file | Read PURPLE gene segments |
| read_snv_count_file | Read SNV count file output by woof |
| read_snv_eval_file | Read SNV eval file output by woof |
| read_sv_eval_file | Read SV eval metrics file output by woof |
| read_sv_fpfn_file | Read SV FP/FN file output by woof |
| tree | Call system tree |
| umccrise_outputs | Get umccrise final output files |
| woofr-package | woofr: Helper R Functions for woof |
