read_purple_gene_file: Read PURPLE gene segments
In pdiakumis/woofr: Helper R Functions for woof
read_purple_gene_file R Documentation
Read PURPLE gene segments
Description
Reads the gene.cnv file output by PURPLE
Usage
read_purple_gene_file(x)
Arguments
x
Path to PURPLE gene.cnv (or cnv.gene.tsv) file.
Value
A tibble with the main columns of interest from the PURPLE gene.cnv file i.e.
chrom, start, end, gene, min_cn and max_cn.
Examples
x <- system.file("extdata", "cnv/sample_A.purple.gene.cnv", package = "woofr")
y <- system.file("extdata", "cnv/sample_B.purple.cnv.gene.tsv", package = "woofr")
read_purple_gene_file(x)
read_purple_gene_file(y)
pdiakumis/woofr documentation built on Jan. 4, 2024, 11:22 a.m.
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| read_purple_gene_file | R Documentation |
Read PURPLE gene segments
Description
Reads the gene.cnv file output by PURPLE
Usage
read_purple_gene_file(x)
Arguments
x |
Path to PURPLE |
Value
A tibble with the main columns of interest from the PURPLE gene.cnv file i.e.
chrom, start, end, gene, min_cn and max_cn.
Examples
x <- system.file("extdata", "cnv/sample_A.purple.gene.cnv", package = "woofr")
y <- system.file("extdata", "cnv/sample_B.purple.cnv.gene.tsv", package = "woofr")
read_purple_gene_file(x)
read_purple_gene_file(y)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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