check_comparison_input: Check Comparison Input File
In pdiakumis/woofr: Helper R Functions for woof
check_comparison_input R Documentation
Check Comparison Input File
Description
Checks that the input file is suitable for running 'woof compare'.
Usage
check_comparison_input(x)
Arguments
x
Path to tab-separated comparison input file.
Must contain the following five fields per file (NOTE: do not include column names):
sample name, variant type (SNV, SV or CNV), file label, run1 & run2 file paths (can be S3 paths).
Value
If the file has issues, an error message. If there
are no issues, simply returns file path.
Examples
## Not run:
x <- "path/to/cromwell_inputs.tsv"
check_comparison_input(x)
## End(Not run)
pdiakumis/woofr documentation built on Dec. 11, 2024, 11:04 a.m.
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| check_comparison_input | R Documentation |
Check Comparison Input File
Description
Checks that the input file is suitable for running 'woof compare'.
Usage
check_comparison_input(x)
Arguments
x |
Path to tab-separated comparison input file. Must contain the following five fields per file (NOTE: do not include column names): sample name, variant type (SNV, SV or CNV), file label, run1 & run2 file paths (can be S3 paths). |
Value
If the file has issues, an error message. If there are no issues, simply returns file path.
Examples
## Not run:
x <- "path/to/cromwell_inputs.tsv"
check_comparison_input(x)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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