Man pages for pdiakumis/woofr
Helper R Functions for woof

check_comparison_inputCheck Comparison Input File
compare_purple_gene_filesCompare two PURPLE gene CNV files
get_circosGet Manta Circos with FP/FN calls
guess_file_typeGuess Type of File
hrd_cmpHRDetect/CHORD Comparison
lfList Files in knitr kable
list_s3_objectsList AWS S3 Objects
manta_isecIntersect two Manta VCF files
manta_isec_statsManta Comparison Metrics
merge_umccrise_outputsGather umccrise filepaths from two umccrise final directories...
multiqc_cmpCompare MultiQC JSONs
pcgr_cmpPCGR TSV Comparison
prep_manta_vcfPrepare Manta VCF for Circos
qc_sum_cmpumccrise QC Summary Comparison
read_manta_vcfRead Manta VCF
read_purple_gene_fileRead PURPLE gene segments
read_snv_count_fileRead SNV count file output by woof
read_snv_eval_fileRead SNV eval file output by woof
read_sv_eval_fileRead SV eval metrics file output by woof
read_sv_fpfn_fileRead SV FP/FN file output by woof
treeCall system tree
umccrise_outputsGet umccrise final output files
woofr-packagewoofr: Helper R Functions for woof
pdiakumis/woofr documentation built on Jan. 4, 2024, 11:22 a.m.