merge_umccrise_outputs: Gather umccrise filepaths from two umccrise final directories...

In pdiakumis/woofr: Helper R Functions for woof

Gather umccrise filepaths from two umccrise final directories into a single tibble

Description

Generates a tibble containing absolute paths to (common) files from two umccrise final directories.

Usage

merge_umccrise_outputs(d1, d2, sample)

Arguments

d1	Path to first <umccrised/sample> directory.
d2	Path to second <umccrised/sample> directory.
sample	Sample name.

Value

A tibble with the following columns:

• sample name

• variant type (e.g. SNV, SV, CNV)

• file label (e.g. pcgr, cpsr, purple etc.)

• run1 file path

• run2 file path

Examples

## Not run: 
um1 <- "path/to/umccrised/sample1"
um2 <- "path/to/umccrised/sample2"
merge_umccrise_outputs(um1, um2)

## End(Not run)

pdiakumis/woofr documentation built on Jan. 4, 2024, 11:22 a.m.