get_circos: Get Manta Circos with FP/FN calls

In pdiakumis/woofr: Helper R Functions for woof

Get Manta Circos with FP/FN calls

Description

Returns Circos plot highlighting FP/FN calls from a Manta comparison.

Usage

get_circos(mi, samplename, outdir)

Arguments

mi	Output from manta_isec.
samplename	Sample name (used for labelling).
outdir	Directory to write circos to.

Value

Path to circos plot highlighting FP (green) and FN (red) calls from a Manta comparison.

Examples

## Not run: 
f1 <- "path/to/run1/manta.vcf.gz"
f2 <- "path/to/run2/manta.vcf.gz"
mi <- manta_isec(f1, f2)
get_circos(mi, "sampleA", "outdir1")

## End(Not run)

pdiakumis/woofr documentation built on Jan. 4, 2024, 11:22 a.m.