Files in perishky/ewaff

Efficient and Flexible EWAS

R/build-design-matrix.r R/cpg-summary.r R/fit-loop.r R/fit-multi-loop.r R/handle-outliers.r R/knit-report.r R/limma.r R/meta-sites.r R/msg.r R/plots.r R/report.r R/shrink.r R/sites-coxph.r R/sites-glm.r R/sites.r R/survival-formulas.r R/sva.r R/variable-summaries.r README.md docs/tutorial.md docs/tutorial.rmd inst/report/additional-associations.rmd inst/report/additional.rmd inst/report/blank.rmd inst/report/covariate-associations.rmd inst/report/covariate.rmd inst/report/cpg-plot.rmd inst/report/manhattan-plot.rmd inst/report/plot.rmd inst/report/qq-plot.rmd inst/report/report.rmd inst/report/sample-characteristics.rmd man/ewaff.covariate.associations.Rd man/ewaff.cpg.summary.Rd man/ewaff.glm.plot.Rd man/ewaff.glm.residuals.plot.Rd man/ewaff.handle.outliers.Rd man/ewaff.manhattan.plot.Rd man/ewaff.meta.sites.Rd man/ewaff.qq.plot.Rd man/ewaff.report.Rd man/ewaff.report.parameters.Rd man/ewaff.sample.characteristics.Rd man/ewaff.sites.Rd man/ewaff.summarize.relationship.Rd man/ewaff.summary.Rd man/ewaff.sva.Rd man/knit.report.Rd man/scatter.thinning.Rd regenerate.r tests/simulation-functions.r tests/test-all.r tests/test-coxph.r tests/test-report.r tests/test-sites.r