MakeblastDB_pipeline: Makeblastdb.R indexes Blast fasta databases December 21 2023,...
In phac-nml/wade: Executes molecular typing on contig assemblies
MakeblastDB_pipeline R Documentation
Makeblastdb.R indexes Blast fasta databases
December 21 2023, Walter Demczuk & Shelley Peterson
Description
Index BLAST fasta datases of lookup data
Usage
MakeblastDB_pipeline(Org_id, Test_id, LocusID, curr_work_dir)
Arguments
Org_id
Organism to query: GAS, PNEUMO or GONO
Test_id
Sample number associated with contig.fasta file
LocusID
Locus_name to build blast database
curr_work_dir
Start up directory from pipeline project to locate system file structure
Details
Takes Organism, Test, and Locus and create BLAST databases
Value
A table frame containing the results of the query
phac-nml/wade documentation built on March 16, 2024, 8:32 a.m.
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| MakeblastDB_pipeline | R Documentation |
Makeblastdb.R indexes Blast fasta databases December 21 2023, Walter Demczuk & Shelley Peterson
Description
Index BLAST fasta datases of lookup data
Usage
MakeblastDB_pipeline(Org_id, Test_id, LocusID, curr_work_dir)
Arguments
Org_id |
Organism to query: GAS, PNEUMO or GONO |
Test_id |
Sample number associated with contig.fasta file |
LocusID |
Locus_name to build blast database |
curr_work_dir |
Start up directory from pipeline project to locate system file structure |
Details
Takes Organism, Test, and Locus and create BLAST databases
Value
A table frame containing the results of the query
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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