rename_fastqs: Renames submitted WGS reads to NML LabWare numbers July 3,...
In phac-nml/wade: Executes molecular typing on contig assemblies
View source: R/Rename_Submitted_Reads.R
rename_fastqs R Documentation
Renames submitted WGS reads to NML LabWare numbers
July 3, 2024, Shelley Peterson
Description
This script renames submitted PT reads to NML numbers for upload into IRIDA
Usage
rename_fastqs(x)
Arguments
curr_work_dir
Start up directory from pipeline project to locate system file structure
Details
Copies submitted raw reads from submitted sample no to LabWare No.
Reads in a list of new LabWare Nos. and submitted read file numbers from metadata.csv
Value
Copied files with the new NML lab numbers, outputs samples which failed to copy into the R console
phac-nml/wade documentation built on Feb. 8, 2025, 3:02 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/Rename_Submitted_Reads.R
| rename_fastqs | R Documentation |
Renames submitted WGS reads to NML LabWare numbers July 3, 2024, Shelley Peterson
Description
This script renames submitted PT reads to NML numbers for upload into IRIDA
Usage
rename_fastqs(x)
Arguments
curr_work_dir |
Start up directory from pipeline project to locate system file structure |
Details
Copies submitted raw reads from submitted sample no to LabWare No. Reads in a list of new LabWare Nos. and submitted read file numbers from metadata.csv
Value
Copied files with the new NML lab numbers, outputs samples which failed to copy into the R console
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.