labware_pneumo_virulence: Labware Upload Formatter for PNEUMO VIRULENCE February 5...
In phac-nml/wade: Executes molecular typing on contig assemblies
View source: R/LabwareUpload_PNEUMO_VIRULENCE.R
labware_pneumo_virulence R Documentation
Labware Upload Formatter for PNEUMO VIRULENCE
February 5 2024, Walter Demczuk & Shelley Peterson
run MasterBlastR first, then this script outputs csv to LabWareUpload_GAS_TOXINS.csv in Output folder
Description
Then run this analysis to combine data the full amr profile to upload to LabWare.
Usage
labware_pneumo_virulence(Org_id, curr_work_dir)
Arguments
Org_id
Organism to query: GAS, PNEUMO or GONO
curr_work_dir
Start up directory from pipeline project to locate system file structure
Value
A table frame containing the results of the query
phac-nml/wade documentation built on Feb. 8, 2025, 3:02 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/LabwareUpload_PNEUMO_VIRULENCE.R
| labware_pneumo_virulence | R Documentation |
Labware Upload Formatter for PNEUMO VIRULENCE February 5 2024, Walter Demczuk & Shelley Peterson run MasterBlastR first, then this script outputs csv to LabWareUpload_GAS_TOXINS.csv in Output folder
Description
Then run this analysis to combine data the full amr profile to upload to LabWare.
Usage
labware_pneumo_virulence(Org_id, curr_work_dir)
Arguments
Org_id |
Organism to query: GAS, PNEUMO or GONO |
curr_work_dir |
Start up directory from pipeline project to locate system file structure |
Value
A table frame containing the results of the query
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.