labware_pneumo_amr: Labware Upload Formatter for PNEUMO AMR December 21 2023,...
In phac-nml/wade: Executes molecular typing on contig assemblies
View source: R/LabwareUpload_PNEUMO_AMR.R
labware_pneumo_amr R Documentation
Labware Upload Formatter for PNEUMO AMR
December 21 2023, Walter Demczuk & Shelley Peterson
Run AMR first, then run the 23S allele counts,
Then run this analysis to combine data from AMR, 23S rRNA
to prepare full amr profile to upload to LabWare.
Description
Labware Upload Formatter for PNEUMO AMR
December 21 2023, Walter Demczuk & Shelley Peterson
Run AMR first, then run the 23S allele counts,
Then run this analysis to combine data from AMR, 23S rRNA
to prepare full amr profile to upload to LabWare.
Usage
labware_pneumo_amr(Org_id, curr_work_dir)
Arguments
Org_id
Organism to query: GAS, PNEUMO or GONO
curr_work_dir
Start up directory from pipeline project to locate system file structure
Value
A table frame containing the results of the query
phac-nml/wade documentation built on March 16, 2024, 8:32 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/LabwareUpload_PNEUMO_AMR.R
| labware_pneumo_amr | R Documentation |
Labware Upload Formatter for PNEUMO AMR December 21 2023, Walter Demczuk & Shelley Peterson Run AMR first, then run the 23S allele counts, Then run this analysis to combine data from AMR, 23S rRNA to prepare full amr profile to upload to LabWare.
Description
Labware Upload Formatter for PNEUMO AMR December 21 2023, Walter Demczuk & Shelley Peterson Run AMR first, then run the 23S allele counts, Then run this analysis to combine data from AMR, 23S rRNA to prepare full amr profile to upload to LabWare.
Usage
labware_pneumo_amr(Org_id, curr_work_dir)
Arguments
Org_id |
Organism to query: GAS, PNEUMO or GONO |
curr_work_dir |
Start up directory from pipeline project to locate system file structure |
Value
A table frame containing the results of the query
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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