Org_id: VFDB.R Generic Virulence Factor Profiler :...
In phac-nml/wade: Executes molecular typing on contig assemblies
Org_id R Documentation
VFDB.R
Generic Virulence Factor Profiler : SampleNo_contigs.fasta vs. VFDB database
Description
Takes Organism, Sample Number and queries a contig.fasta file
Usage
Org_id
Arguments
Org_id
Organism to query: GAS, PNEUMO or GONO
SampleNo
Sample number (or list of sample numbers) associated with contig.fasta file
curr_work_dir
Start up directory from pipeline project to locate system file structure
Format
An object of class character of length 1.
Details
searches for virulence factors in genomic data
Value
A table frame containing the results of the query
phac-nml/wade documentation built on March 16, 2024, 8:32 a.m.
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| Org_id | R Documentation |
VFDB.R Generic Virulence Factor Profiler : SampleNo_contigs.fasta vs. VFDB database
Description
Takes Organism, Sample Number and queries a contig.fasta file
Usage
Org_id
Arguments
Org_id |
Organism to query: GAS, PNEUMO or GONO |
SampleNo |
Sample number (or list of sample numbers) associated with contig.fasta file |
curr_work_dir |
Start up directory from pipeline project to locate system file structure |
Format
An object of class character of length 1.
Details
searches for virulence factors in genomic data
Value
A table frame containing the results of the query
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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