UnionExtractFields: UnionExtractFields
In piquelab/QuASAR: Quantitative Allele Specific Analysis of Reads

Description Usage Arguments Value Author(s)

From a list of files (fileList), find the union of all loci and return a list with the data prepared to run QuASAR.

1	UnionExtractFields(fileList, combine = FALSE)

`fileList`	List of files *.quasar.in.gz
`combine`	Collapses all samples into a single sample if true. Default is false

returns a R list with the following elements: Ref: Matrix with number of reads matching the reference allele. Alt: Matrix with number of reads matching the alternate allele. Err: Matrix with number of reads matchine neither the ref. or alt. allele. anno: Object with the annotation for the SNPs.

Chris Harvey

piquelab/QuASAR documentation built on May 25, 2019, 7:14 a.m.