Description Usage Arguments Value
using genotypes from QuASAR, conduct inference on allelic imbalance
1 2 | aseInference(gts, eps.vect, priors, ref.mat, alt.mat, min.cov, sample.names,
annos)
|
gts |
posterior probabilities of genotypes from QuASAR |
eps.vect |
QuASAR estimates of sequencing error for each sample |
priors |
1K genomes minor allele frequencies as priors |
ref.mat |
matrix of reference allele counts |
alt.mat |
matrix of alternate allele counts |
min.cov |
threshold for the minimum coverage across all samples |
sample.names |
verctor of sample names |
annos |
annotations for all loci |
inference.data list.
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