aseInference: aseInference

Description Usage Arguments Value

Description

using genotypes from QuASAR, conduct inference on allelic imbalance

Usage

1
2
aseInference(gts, eps.vect, priors, ref.mat, alt.mat, min.cov, sample.names,
  annos)

Arguments

gts

posterior probabilities of genotypes from QuASAR

eps.vect

QuASAR estimates of sequencing error for each sample

priors

1K genomes minor allele frequencies as priors

ref.mat

matrix of reference allele counts

alt.mat

matrix of alternate allele counts

min.cov

threshold for the minimum coverage across all samples

sample.names

verctor of sample names

annos

annotations for all loci

Value

inference.data list.


piquelab/QuASAR documentation built on May 25, 2019, 7:14 a.m.