Description Usage Arguments Value
for a single sample conduct genotyping and estimate sample error
1 2 | fitAseNull(ref, alt, eps = 0.1, log.gmat, max.it = 100, tol = 1e-16,
fixGprior = TRUE)
|
ref |
reference read count |
alt |
alternate read count |
eps |
starting value |
log.gmat |
log of genotype priors |
max.it |
maximum number of iterations for algorithm |
tol |
tolerance to assess convergance |
fixGprior |
logical to fix genotype priors across all steps of the algorithm |
list of genotypes, log genotypes, error estimate, log-likelihood, and the sum of log likelihoods
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