Man pages for pjbouchet/espresso
Bayesian Inference For Multi-Species Behavioural Dose-response Functions
| compare_models | Benchmark results |
| compile_rjMCMC | Dose-response curves |
| configure_rjMCMC | Initial configuration |
| create_groups | Create groupings |
| create_report | Generate report |
| espresso | Bayesian inference for multi-species behavioural... |
| example_brs | Example dataset |
| gibbs | Posterior inference for dose-response models |
| hexa2hex | Mimick transparent colours |
| houser_dose | Dose-response curve for California sea lions and bottlenose... |
| jacobson_dose | Dose-response curve for Blainville's beaked whales from the... |
| likelihood | The Truncated Normal Distribution |
| moretti_dose | Dose-response curve for Blainville's beaked whales |
| normal_prior | Normal prior on covariates |
| plot.dose_response | Dose-response curves |
| plot.gvs | Diagnostic plots |
| plot_phase | Compare dose-response functions |
| plot.rjtrace | Diagnostic plots |
| print.dose_response | Print method for objects of class 'dose_response' |
| print.gvs | Print method for objects of class 'gvs' |
| print.rjtrace | Print method for objects of class 'rjtrace' |
| prob_covariates | Posterior inclusion probabilities for contextual covariates |
| propdens_ff | Proposal densities for functional form jumps. |
| propdens_mh | Proposal densities for between-model jumps |
| propdens_rj | Proposal densities for between-model jumps |
| proposal_ff | Proposal for jumps between functional forms |
| proposal_rj | Proposal for between-model jumps |
| proposal_t.ij | Proposal for within-model jumps |
| propose_jump | Proposal for between-model jumps |
| range_finder | Range finder |
| read_data | Import dose-response data |
| run_rjMCMC | Reversible jump MCMC |
| setup_rjMCMC | Set up the rjMCMC sampler |
| simulate_data | Generate a simulated dataset |
| species_brs | Cetacean species |
| summary.brsdata | Summarise dose-response data |
| summary.gvs | Some diagnostics for fitted dose-response models |
| summary.rjtrace | Some diagnostics for fitted dose-response models |
| TL | Transmission loss |
| trace_rjMCMC | Extract trace |
| undo_groups | Dissolve groupings |
| uniform_prior | Uniform prior |
| update_rjMCMC | Update sampler |
