Man pages for pkimes/spliceclust
Visualization and Clustering of Spliced Components
| adj_ranges | adjust ranges if necessary |
| concomp2name | match concomp with gene or transcript name |
| concomp-class | Connected Component |
| find_annotations | construct annotation track for concomp object |
| klk12_hnsc_cc | connected component of KLK12 Expression in HNSC |
| klk12_lusc_gr | GRanges of KLK12 Expression in LUSC |
| long_letters | function defining useful vector of letters |
| name2gidx | match gene name (symbol) to connected component index |
| plot_colors | function defining useful colors |
| pseudoArc | helper function for adding arcs to ggplot2 object via... |
| rgb2hex | helper for converting rgb triple to hex color |
| sampl_sort | function defining all of the sort orders |
| sg_create | construct ggplot2 object for plotting |
| sg_drawbase | construct base ggplot2 object for splicegrahm plot |
| sg_drawjuncs | add junction annotations to base ggplot2 object for... |
| sl_create | construct ggplot2 object for plotting |
| sl_drawbase | construct base ggplot2 object for splicegralp plot |
| slots-generic | Generic Methods for S4 Class Slots in spliceclust |
| sp_create | construct ggplot2 object for plotting |
| sp_drawbase | construct base ggplot2 object for splicegrahm plot |
| sp_drawmodel | construct ggplot object with connected component model for... |
| spliceclust-package | spliceclust |
| splicegrahm | SpliceGraHM: splice graph heatmap |
| splicegrahm2 | SpliceGraHM2: two-class splice graph heatmap |
| splicegralp | SpliceGraLP: splice graph loadings plot |
| splicepca | SplicePCA: splicing graph PCA plot |
| splicepcp | SplicePCP: splice graph parallel coordinates plot |
