sg_create: construct ggplot2 object for plotting

In pkimes/spliceclust: Visualization and Clustering of Spliced Components

Description

construct ggplot2 object for plotting

Usage

sg_create(gr_e, gr_j, vals_e, vals_j, j_incl, log_base, log_shift, bin, n, p_j,
  y_flip = FALSE, same_scale_n = n)

Arguments

gr_e	GenomicRanges for exons
gr_j	GenomicRanges for junctions
vals_e	matrix of exon coverages
vals_j	matrix of junction coverages
j_incl	see splicegrahm documentation
log_base	see splicegrahm documentation
log_shift	see splicegrahm documentation
bin	see splicegrahm documentation
n	number of samples in vals_e, vals_j
p_j	number of junctions in gr_j
y_flip	logical whether model should be flipped on vertical axis (default = FALSE)
same_scale_n	number of samples that should be used to set vertical scaling of splicegrahm2 plot (if splicegrahm2 parameter same_scale = FALSE, then simply n) (default = n)

Author(s)

Patrick Kimes

pkimes/spliceclust documentation built on Jan. 2, 2020, 4:44 a.m.