sg_drawbase: construct base ggplot2 object for splicegrahm plot

In pkimes/spliceclust: Visualization and Clustering of Spliced Components

Description

construct base ggplot2 object for splicegrahm plot

Usage

sg_drawbase(sg_df, use_blk, j_incl, genomic, gr_e, log_base, bin, n, highlight,
  p_j, iflip, mirror = FALSE, same_scale_n = n)

Arguments

sg_df	data.frame output from sg_create
use_blk	see splicegrahm documentation
j_incl	see splicegrahm documentation
genomic	see splicegrahm documentation
gr_e	GenomicRanges for exons
log_base	see splicegrahm documentation
bin	see splicegrahm documentation
n	number of samples in vals_e, vals_j
highlight	see splicegrahm documentation
p_j	number of junctions in gr_j
iflip	logical whether model will be on negative strand
mirror	logical whether model should be flipped on vertical axis (defualt = FALSE)
same_scale_n	number of samples that should be used to set vertical scaling of splicegrahm2 plot (if splicegrahm2 parameter same_scale = FALSE, then simply n) (default = n)

Author(s)

Patrick Kimes

pkimes/spliceclust documentation built on Jan. 2, 2020, 4:44 a.m.