concomp2name: match concomp with gene or transcript name
In pkimes/spliceclust: Visualization and Clustering of Spliced Components
Description
Usage
Arguments
Value
Author(s)
Description
Function matches concomp to nearest
transcript using txdb and txlist. This is further mapepd to
gene names if orgdb is specified. If orgdb is not provided,
transcript IDs are returned instead of gene symbols.
Usage
1
concomp2name(obj, txlist, txdb = NULL, orgdb = NULL)
Arguments
obj
a concomp object
txlist
a list of transcripts, e.g. exonsBy(txdb)
txdb
a transcript database, e.g. TxDb.Hsapiens.UCSC.hg19.knownGene
(default = NULL)
orgdb
a organism database, e.g. org.Hs.eg.db (default = NULL)
Value
a vector of transcript or gene names
Author(s)
Patrick Kimes
pkimes/spliceclust documentation built on Jan. 2, 2020, 4:44 a.m.
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Description Usage Arguments Value Author(s)
Description
Function matches concomp to nearest
transcript using txdb and txlist. This is further mapepd to
gene names if orgdb is specified. If orgdb is not provided,
transcript IDs are returned instead of gene symbols.
Usage
1 | concomp2name(obj, txlist, txdb = NULL, orgdb = NULL)
|
Arguments
obj |
a |
txlist |
a list of transcripts, e.g. |
txdb |
a transcript database, e.g. |
orgdb |
a organism database, e.g. |
Value
a vector of transcript or gene names
Author(s)
Patrick Kimes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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