sampl_sort: function defining all of the sort orders

In pkimes/spliceclust: Visualization and Clustering of Spliced Components

Description

function defining all of the sort orders

Usage

sampl_sort(sort_idx, vals_e, vals_j, n)

Arguments

sort_idx	integer value, see documentation for splicegrahm
vals_e	matrix of exon coverages
vals_j	matrix of junction coverages
n	number of samples

Details

sort_idx can take values of either:

• 1: sort on first exon

• 2: sort on PC 2

• 3: sort on mean exon coverage

• 4: sort on mean exon log-coverage

• 5: rev sort on mean exon coverage

• 6: rev sorton mean exon log-coverage

Author(s)

Patrick Kimes

pkimes/spliceclust documentation built on Jan. 2, 2020, 4:44 a.m.