BiodbSdfEntry: Entry class for content in SDF format.

In pkrog/biodb: biodb, a library and a development framework for connecting to chemical and biological databases

Entry class for content in SDF format.

Description

Entry class for content in SDF format.

Entry class for content in SDF format.

Details

This is an abstract class for handling database entries whose content is in SDF format.

Super classes

biodb::BiodbEntry -> biodb::BiodbTxtEntry -> BiodbSdfEntry

Methods

Public methods

• BiodbSdfEntry$new()

• BiodbSdfEntry$clone()

Inherited methods

• biodb::BiodbEntry$appendFieldValue()
• biodb::BiodbEntry$cloneInstance()
• biodb::BiodbEntry$computeFields()
• biodb::BiodbEntry$fieldHasBasicClass()
• biodb::BiodbEntry$getBiodb()
• biodb::BiodbEntry$getDbClass()
• biodb::BiodbEntry$getField()
• biodb::BiodbEntry$getFieldCardinality()
• biodb::BiodbEntry$getFieldClass()
• biodb::BiodbEntry$getFieldDef()
• biodb::BiodbEntry$getFieldNames()
• biodb::BiodbEntry$getFieldValue()
• biodb::BiodbEntry$getFieldsAsDataframe()
• biodb::BiodbEntry$getFieldsAsJson()
• biodb::BiodbEntry$getFieldsByType()
• biodb::BiodbEntry$getId()
• biodb::BiodbEntry$getName()
• biodb::BiodbEntry$getParent()
• biodb::BiodbEntry$hasField()
• biodb::BiodbEntry$isNew()
• biodb::BiodbEntry$makesRefToEntry()
• biodb::BiodbEntry$parentIsAConnector()
• biodb::BiodbEntry$parseContent()
• biodb::BiodbEntry$print()
• biodb::BiodbEntry$removeField()
• biodb::BiodbEntry$setField()
• biodb::BiodbEntry$setFieldValue()

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Method new()

New instance initializer. Entry objects must not be created directly. Instead, they are retrieved through the connector instances.

Usage

BiodbSdfEntry$new(...)

Arguments

...

All parameters are passed to the super class initializer.

Returns

Nothing.

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Method clone()

The objects of this class are cloneable with this method.

Usage

BiodbSdfEntry$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

See Also

Super class BiodbTxtEntry.

Examples

# Create a concrete entry class inheriting from CSV class:
MyEntry <- R6::R6Class("MyEntry", inherit=biodb::BiodbSdfEntry)

pkrog/biodb documentation built on Nov. 29, 2022, 4:24 a.m.