API for pkrog/biodb
biodb, a library and a development framework for connecting to chemical and biological databases

Global functions
BiodbBiocPersistentCache Man page
BiodbConfig Man page
BiodbConn Man page
BiodbConnBase Man page
BiodbCsvEntry Man page
BiodbCustomPersistentCache Man page
BiodbDbInfo Man page
BiodbDbsInfo Man page
BiodbEntry Man page
BiodbEntryField Man page
BiodbEntryFields Man page
BiodbFactory Man page
BiodbHtmlEntry Man page
BiodbJsonEntry Man page
BiodbListEntry Man page
BiodbMain Man page
BiodbPersistentCache Man page
BiodbRequest Man page
BiodbRequestScheduler Man page
BiodbRequestSchedulerRule Man page
BiodbSdfEntry Man page
BiodbSqlBinaryOp Man page
BiodbSqlExpr Man page
BiodbSqlField Man page
BiodbSqlList Man page
BiodbSqlLogicalOp Man page
BiodbSqlQuery Man page
BiodbSqlValue Man page
BiodbTestMsgAck Man page
BiodbTxtEntry Man page
BiodbUrl Man page
BiodbXmlEntry Man page
CompCsvFileConn Man page
CompCsvFileEntry Man page
CompSqliteConn Man page
CompSqliteEntry Man page
CsvFileConn Man page
ExtConnClass Man page
ExtCpp Man page
ExtDefinitions Man page
ExtDescriptionFile Man page
ExtEntryClass Man page
ExtFileGenerator Man page
ExtGenerator Man page
ExtGitignore Man page
ExtLicense Man page
ExtMakefile Man page
ExtPackage Man page
ExtPackageFile Man page
ExtRbuildignore Man page
ExtReadme Man page
ExtTests Man page
ExtTravisFile Man page
ExtVignette Man page
FileTemplate Man page
MassCsvFileConn Man page
MassCsvFileEntry Man page
MassSqliteConn Man page
MassSqliteEntry Man page
Progress Man page
Range Man page
RequestResult Man page
SqliteConn Man page
TestRefEntries Man page
abstractClass Man page Source code
abstractMethod Man page Source code
biodb Man page
biodb-package Man page
calcDistance Source code
checkDeprecatedCacheFolders Man page Source code
checkEntryFields Source code
checkEntryIds Source code
closeMatchPpm Man page Source code
compareSpectra Source code
compareVersions Source code
connNameToClassPrefix Man page Source code
convertTolToRange Source code
cosine Source code
createBiodbTestInstance Man page Source code
df2str Man page Source code
doesRCurlRequestUrlExist Man page Source code
error Man page Source code
error0 Man page Source code
extractVersion Source code
genNewExtPkg Man page Source code
getBaseUrlContent Man page Source code
getBaseUrlRequestResult Man page Source code
getConnClassName Man page Source code
getConnTypes Man page Source code
getDefaultCacheDir Man page Source code
getEntryClassName Man page Source code
getEntryTypes Man page Source code
getFolder Source code
getFolderFromVect Source code
getLicenses Man page Source code
getLogger Man page Source code
getPkgName Man page Source code
getRCurlContent Man page Source code
getRCurlRequestResult Man page Source code
getReposName Man page Source code
getTestOutputDir Man page Source code
getTestRefFolder Source code
getUrlContent Man page Source code
getUrlRequestResult Man page Source code
listTestRefEntries Man page Source code
loadFileContents Man page Source code
loadTestRefEntries Source code
loadTestRefEntry Source code
logDebug Man page Source code
logDebug0 Man page Source code
logInfo Man page Source code
logInfo0 Man page Source code
logTrace Man page Source code
logTrace0 Man page Source code
lst2str Man page Source code
makeRCurlOptions Man page Source code
matchPpm Source code
newInst Man page Source code
notifyObservers Source code
pbachtttarya Source code
pkernel Source code
prepareFileContents Man page Source code
runGenericAdjustableTests Source code
runGenericLongTests Source code
runGenericShortTests Source code
runGenericTests Man page Source code
saveContentsToFiles Man page Source code
simpList Source code
simplifySpectrum Source code
splitVersion Source code
test.annotateMzValues Source code
test.annotateMzValues_real_values Source code
test.collapseResultsDataFrame Source code
test.create.conn.with.same.url Source code
test.db.copy Source code
test.db.editing Source code
test.db.writing Source code
test.db.writing.with.col.add Source code
test.entry.fields Source code
test.entry.ids Source code
test.entry.image.url Source code
test.entry.image.url.download Source code
test.entry.page.url Source code
test.entry.page.url.download Source code
test.getChromCol Source code
test.getMzValues Source code
test.msmsSearch.empty.spectrum Source code
test.msmsSearch.no.ids Source code
test.msmsSearch.null.spectrum Source code
test.msmsSearch.self.match Source code
test.nb.entries Source code
test.peak.table Source code
test.rt.unit Source code
test.searchByName Source code
test.searchCompound Source code
test.searchForEntries Source code
test.searchForMassSpectra Source code
test.searchForMassSpectra.multiple.mz Source code
test.searchForMassSpectra.with.NA.value Source code
test.searchForMassSpectra.with.precursor Source code
test.searchForMassSpectra.with.precursor.and.multiple.inputs Source code
test.searchMsPeaks Source code
test.searchMsPeaks.rt Source code
test.searchMsPeaks.with.NA.value Source code
test.wrong.entry Source code
test.wrong.entry.among.good.ones Source code
testContext Man page Source code
testEntryLoading Source code
testThat Man page Source code
test_annotateMzValues_additional_fields Source code
test_annotateMzValues_input_dataframe_untouched Source code
test_annotateMzValues_input_vector Source code
test_annotateMzValues_ppm_tol Source code
test_cache_for_local_db Source code
upgradeExtPkg Man page Source code
warn Man page Source code
warn0 Man page Source code
wcosine Source code
pkrog/biodb documentation built on Nov. 29, 2022, 4:24 a.m.