MassSqliteConn | R Documentation |
This is the connector class for a MASS SQLite database.
biodb::BiodbConnBase
-> biodb::BiodbConn
-> biodb::SqliteConn
-> MassSqliteConn
biodb::BiodbConnBase$getBaseUrl()
biodb::BiodbConnBase$getConnClass()
biodb::BiodbConnBase$getConnClassName()
biodb::BiodbConnBase$getDbClass()
biodb::BiodbConnBase$getEntryClass()
biodb::BiodbConnBase$getEntryClassName()
biodb::BiodbConnBase$getEntryContentType()
biodb::BiodbConnBase$getEntryFileExt()
biodb::BiodbConnBase$getEntryIdField()
biodb::BiodbConnBase$getName()
biodb::BiodbConnBase$getPropSlots()
biodb::BiodbConnBase$getPropValSlot()
biodb::BiodbConnBase$getPropertyValue()
biodb::BiodbConnBase$getSchedulerNParam()
biodb::BiodbConnBase$getSchedulerTParam()
biodb::BiodbConnBase$getToken()
biodb::BiodbConnBase$getUrl()
biodb::BiodbConnBase$getUrls()
biodb::BiodbConnBase$getWsUrl()
biodb::BiodbConnBase$getXmlNs()
biodb::BiodbConnBase$hasProp()
biodb::BiodbConnBase$hasPropSlot()
biodb::BiodbConnBase$isSlotProp()
biodb::BiodbConnBase$propExists()
biodb::BiodbConnBase$setBaseUrl()
biodb::BiodbConnBase$setPropValSlot()
biodb::BiodbConnBase$setPropertyValue()
biodb::BiodbConnBase$setSchedulerNParam()
biodb::BiodbConnBase$setSchedulerTParam()
biodb::BiodbConnBase$setToken()
biodb::BiodbConnBase$setUrl()
biodb::BiodbConnBase$setWsUrl()
biodb::BiodbConnBase$updatePropertiesDefinition()
biodb::BiodbConn$addNewEntry()
biodb::BiodbConn$allowEditing()
biodb::BiodbConn$allowWriting()
biodb::BiodbConn$annotateMzValues()
biodb::BiodbConn$checkDb()
biodb::BiodbConn$collapseResultsDataFrame()
biodb::BiodbConn$correctIds()
biodb::BiodbConn$deleteAllCacheEntries()
biodb::BiodbConn$deleteAllEntriesFromPersistentCache()
biodb::BiodbConn$deleteAllEntriesFromVolatileCache()
biodb::BiodbConn$deleteWholePersistentCache()
biodb::BiodbConn$disallowEditing()
biodb::BiodbConn$disallowWriting()
biodb::BiodbConn$download()
biodb::BiodbConn$editingIsAllowed()
biodb::BiodbConn$filterEntriesOnRt()
biodb::BiodbConn$getAllCacheEntries()
biodb::BiodbConn$getAllVolatileCacheEntries()
biodb::BiodbConn$getBiodb()
biodb::BiodbConn$getCacheFile()
biodb::BiodbConn$getCacheId()
biodb::BiodbConn$getChromCol()
biodb::BiodbConn$getDownloadPath()
biodb::BiodbConn$getEntry()
biodb::BiodbConn$getEntryContent()
biodb::BiodbConn$getEntryContentFromDb()
biodb::BiodbConn$getEntryContentRequest()
biodb::BiodbConn$getEntryIds()
biodb::BiodbConn$getEntryImageUrl()
biodb::BiodbConn$getEntryPageUrl()
biodb::BiodbConn$getId()
biodb::BiodbConn$getMatchingMzField()
biodb::BiodbConn$getMzValues()
biodb::BiodbConn$getNbEntries()
biodb::BiodbConn$getNbPeaks()
biodb::BiodbConn$getSearchableFields()
biodb::BiodbConn$isCompounddb()
biodb::BiodbConn$isDownloadable()
biodb::BiodbConn$isDownloaded()
biodb::BiodbConn$isEditable()
biodb::BiodbConn$isExtracted()
biodb::BiodbConn$isMassdb()
biodb::BiodbConn$isRemotedb()
biodb::BiodbConn$isSearchableByField()
biodb::BiodbConn$isWritable()
biodb::BiodbConn$makeRequest()
biodb::BiodbConn$makesRefToEntry()
biodb::BiodbConn$msmsSearch()
biodb::BiodbConn$print()
biodb::BiodbConn$requiresDownload()
biodb::BiodbConn$searchByName()
biodb::BiodbConn$searchCompound()
biodb::BiodbConn$searchForEntries()
biodb::BiodbConn$searchForMassSpectra()
biodb::BiodbConn$searchMsEntries()
biodb::BiodbConn$searchMsPeaks()
biodb::BiodbConn$searchMzRange()
biodb::BiodbConn$searchMzTol()
biodb::BiodbConn$setDownloadedFile()
biodb::BiodbConn$setEditingAllowed()
biodb::BiodbConn$setMatchingMzField()
biodb::BiodbConn$setWritingAllowed()
biodb::BiodbConn$write()
biodb::BiodbConn$writingIsAllowed()
biodb::SqliteConn$getQuery()
biodb::SqliteConn$hasField()
biodb::SqliteConn$initialize()
clone()
The objects of this class are cloneable with this method.
MassSqliteConn$clone(deep = FALSE)
deep
Whether to make a deep clone.
Super class SqliteConn
.
# Create an instance with default settings: mybiodb <- biodb::newInst() # Get path to LCMS database example file lcmsdb <- system.file("extdata", "massbank_extract.sqlite", package="biodb") # Create a connector conn <- mybiodb$getFactory()$createConn('mass.sqlite', url=lcmsdb) # Get an entry e <- conn$getEntry('34.pos.col12.0.78') # Terminate instance. mybiodb$terminate()
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.