biodb-package: biodb: biodb, a library and a development framework for...
In pkrog/biodb: biodb, a library and a development framework for connecting to chemical and biological databases
biodb-package R Documentation
biodb: biodb, a library and a development framework for connecting to chemical and biological databases
Description
The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.
Details
To get a presentation of the biodb package and get started with it, please
see the "biodb" vignette.
vignette('biodb', package='biodb')
Author(s)
Maintainer: Pierrick Roger pierrick.roger@cea.fr (ORCID)
Other contributors:
Alexis Delabrière delabriere@imsb.biol.ethz.ch (ORCID) [contributor]
See Also
BiodbMain, BiodbConfig, BiodbFactory,
BiodbPersistentCache, BiodbDbsInfo, BiodbEntryFields.
pkrog/biodb documentation built on Nov. 29, 2022, 4:24 a.m.
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| biodb-package | R Documentation |
biodb: biodb, a library and a development framework for connecting to chemical and biological databases
Description
The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.
Details
To get a presentation of the biodb package and get started with it, please see the "biodb" vignette.
vignette('biodb', package='biodb')
Author(s)
Maintainer: Pierrick Roger pierrick.roger@cea.fr (ORCID)
Other contributors:
Alexis Delabrière delabriere@imsb.biol.ethz.ch (ORCID) [contributor]
See Also
BiodbMain, BiodbConfig, BiodbFactory, BiodbPersistentCache, BiodbDbsInfo, BiodbEntryFields.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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