Files in pkrog/biodb
biodb, a library and a development framework for connecting to chemical and biological databases

.BBSoptions

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

Makefile

NAMESPACE

NEWS

R/BiodbBiocPersistentCache.R R/BiodbConfig.R R/BiodbConn.R R/BiodbConnBase.R R/BiodbCsvEntry.R R/BiodbCustomPersistentCache.R R/BiodbDbInfo.R R/BiodbDbsInfo.R R/BiodbEntry.R R/BiodbEntryField.R R/BiodbEntryFields.R R/BiodbFactory.R R/BiodbHtmlEntry.R R/BiodbJsonEntry.R R/BiodbListEntry.R R/BiodbMain.R R/BiodbPersistentCache.R R/BiodbRequest.R R/BiodbRequestScheduler.R R/BiodbRequestSchedulerRule.R R/BiodbSdfEntry.R R/BiodbSqlBinaryOp.R R/BiodbSqlExpr.R R/BiodbSqlField.R R/BiodbSqlList.R R/BiodbSqlLogicalOp.R R/BiodbSqlQuery.R R/BiodbSqlValue.R R/BiodbTestMsgAck.R R/BiodbTxtEntry.R R/BiodbUrl.R R/BiodbXmlEntry.R R/CompCsvFileConn.R R/CompCsvFileEntry.R R/CompSqliteConn.R R/CompSqliteEntry.R R/CsvFileConn.R R/ExtConnClass.R R/ExtCpp.R R/ExtDefinitions.R R/ExtDescriptionFile.R R/ExtEntryClass.R R/ExtFileGenerator.R R/ExtGenerator.R R/ExtGitignore.R R/ExtLicense.R R/ExtMakefile.R R/ExtPackage.R R/ExtPackageFile.R R/ExtRbuildignore.R R/ExtReadme.R R/ExtTests.R R/ExtTravisFile.R R/ExtVignette.R R/FileTemplate.R R/MassCsvFileConn.R R/MassCsvFileEntry.R R/MassSqliteConn.R R/MassSqliteEntry.R R/Progress.R R/Range.R R/RcppExports.R R/RequestResult.R R/SqliteConn.R R/TestRefEntries.R R/catch-routine-registration.R R/fcts_biodb.R R/fcts_deprecated.R R/fcts_ext.R R/fcts_mass.R R/fcts_misc.R R/fcts_url.R R/generic_tests.R R/package.R R/spec-dist.R R/test_framework.R README.md inst/CONTENT.md

inst/definitions.yml

inst/extdata/ChebiExConn.R inst/extdata/ChebiExEntry.R

inst/extdata/chebi_ex.yml

inst/extdata/chebi_ex_charge_parsing.yml

inst/extdata/chebi_ex_stars_field.yml

inst/extdata/chebi_extract.tsv

inst/extdata/chebi_extract_custom.csv

inst/extdata/chebi_extract_with_unknown_column.tsv

inst/extdata/entry-comp.sqlite-1018.json

inst/extdata/expasy_enzyme_extract.tsv

inst/extdata/generated/chebi_extract.sqlite

inst/extdata/generated/massbank_extract_full.sqlite

inst/extdata/massbank_extract_full.tsv

inst/extdata/massbank_extract_lcms_1.sqlite

inst/extdata/massbank_extract_lcms_1.tsv

inst/extdata/massbank_extract_lcms_2.tsv

inst/extdata/massbank_extract_lcms_3.tsv

inst/extdata/massbank_extract_msms.tsv

inst/extdata/ms.tsv

inst/extdata/uniprot_extract.tsv

inst/features.tsv

inst/templates/AGPL-3.txt

inst/templates/BBSoptions

inst/templates/Conn.R

inst/templates/DESCRIPTION

inst/templates/Entry.R inst/templates/README.md

inst/templates/Rbuildignore

inst/templates/catch-routine-registration.R

inst/templates/definitions.yml

inst/templates/entry-0001.json

inst/templates/example.cpp

inst/templates/gitignore

inst/templates/make_file

inst/templates/package.R

inst/templates/test-100-example.cpp

inst/templates/test-cpp.R

inst/templates/test-runner.cpp

inst/templates/test_001_init_logging.R inst/templates/test_050_fcts.R inst/templates/test_100_generic.R inst/templates/test_200_example.R inst/templates/test_long_001_init_logging.R inst/templates/test_long_100_generic.R inst/templates/test_long_200_example.R inst/templates/testthat.R

inst/templates/travis.yml

inst/templates/vignette.Rmd

inst/testref/chebi_extract_custom.csv

inst/testref/entry-comp.csv.file-1018-content.tsv

inst/testref/entry-comp.csv.file-1018.json

inst/testref/entry-comp.csv.file-15939-content.tsv

inst/testref/entry-comp.csv.file-15939.json

inst/testref/entry-comp.sqlite-1018-content.json

inst/testref/entry-comp.sqlite-1018.json

inst/testref/entry-mass.csv.file-KNA00776-content.tsv

inst/testref/entry-mass.csv.file-KNA00776.json

inst/testref/entry-mass.sqlite-KNA00776-content.json

inst/testref/entry-mass.sqlite-KNA00776.json

inst/testref/mass.csv.file-wrong_header.tsv

inst/testref/mass.csv.file-wrong_nb_cols.tsv

inst/testsrc/db_creation.R inst/vignettes_inc.R longtests/testthat.R longtests/testthat/test_long_001_init_logging.R longtests/testthat/test_long_099_extension.R longtests/testthat/test_long_100_comp.csv.file.R longtests/testthat/test_long_110_comp.sqlite.R longtests/testthat/test_long_120_mass.csv.file.R longtests/testthat/test_long_130_mass.sqlite.R

longtests/testthat/testthat-problems.rds

man/BiodbBiocPersistentCache.Rd man/BiodbConfig.Rd man/BiodbConn.Rd man/BiodbConnBase.Rd man/BiodbCsvEntry.Rd man/BiodbCustomPersistentCache.Rd man/BiodbDbInfo.Rd man/BiodbDbsInfo.Rd man/BiodbEntry.Rd man/BiodbEntryField.Rd man/BiodbEntryFields.Rd man/BiodbFactory.Rd man/BiodbHtmlEntry.Rd man/BiodbJsonEntry.Rd man/BiodbListEntry.Rd man/BiodbMain.Rd man/BiodbPersistentCache.Rd man/BiodbRequest.Rd man/BiodbRequestScheduler.Rd man/BiodbRequestSchedulerRule.Rd man/BiodbSdfEntry.Rd man/BiodbSqlBinaryOp.Rd man/BiodbSqlExpr.Rd man/BiodbSqlField.Rd man/BiodbSqlList.Rd man/BiodbSqlLogicalOp.Rd man/BiodbSqlQuery.Rd man/BiodbSqlValue.Rd man/BiodbTestMsgAck.Rd man/BiodbTxtEntry.Rd man/BiodbUrl.Rd man/BiodbXmlEntry.Rd man/CompCsvFileConn.Rd man/CompCsvFileEntry.Rd man/CompSqliteConn.Rd man/CompSqliteEntry.Rd man/CsvFileConn.Rd man/ExtConnClass.Rd man/ExtCpp.Rd man/ExtDefinitions.Rd man/ExtDescriptionFile.Rd man/ExtEntryClass.Rd man/ExtFileGenerator.Rd man/ExtGenerator.Rd man/ExtGitignore.Rd man/ExtLicense.Rd man/ExtMakefile.Rd man/ExtPackage.Rd man/ExtPackageFile.Rd man/ExtRbuildignore.Rd man/ExtReadme.Rd man/ExtTests.Rd man/ExtTravisFile.Rd man/ExtVignette.Rd man/FileTemplate.Rd man/MassCsvFileConn.Rd man/MassCsvFileEntry.Rd man/MassSqliteConn.Rd man/MassSqliteEntry.Rd man/Progress.Rd man/Range.Rd man/RequestResult.Rd man/SqliteConn.Rd man/TestRefEntries.Rd man/abstractClass.Rd man/abstractMethod.Rd man/biodb-package.Rd man/checkDeprecatedCacheFolders.Rd man/closeMatchPpm.Rd man/connNameToClassPrefix.Rd man/createBiodbTestInstance.Rd man/df2str.Rd man/doesRCurlRequestUrlExist.Rd man/error.Rd man/error0.Rd man/genNewExtPkg.Rd man/getBaseUrlContent.Rd man/getBaseUrlRequestResult.Rd man/getConnClassName.Rd man/getConnTypes.Rd man/getDefaultCacheDir.Rd man/getEntryClassName.Rd man/getEntryTypes.Rd man/getLicenses.Rd man/getLogger.Rd man/getPkgName.Rd man/getRCurlContent.Rd man/getRCurlRequestResult.Rd man/getReposName.Rd man/getTestOutputDir.Rd man/getUrlContent.Rd man/getUrlRequestResult.Rd man/listTestRefEntries.Rd man/loadFileContents.Rd man/logDebug.Rd man/logDebug0.Rd man/logInfo.Rd man/logInfo0.Rd man/logTrace.Rd man/logTrace0.Rd man/lst2str.Rd man/makeRCurlOptions.Rd man/newInst.Rd man/prepareFileContents.Rd man/runGenericTests.Rd man/saveContentsToFiles.Rd man/testContext.Rd man/testThat.Rd man/upgradeExtPkg.Rd man/warn.Rd man/warn0.Rd

src/.gitignore

src/RcppExports.cpp

src/closeMatchPpm.cpp

src/test-100-ms_matching.cpp

src/test-runner.cpp

tests/.gitignore

vignettes/references.bib

pkrog/biodb documentation built on Nov. 29, 2022, 4:24 a.m.

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pkrog/biodb
biodb, a library and a development framework for connecting to chemical and biological databases

Files in pkrog/biodb
biodb, a library and a development framework for connecting to chemical and biological databases

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pkrog/biodb biodb, a library and a development framework for connecting to chemical and biological databases

Files in pkrog/biodb biodb, a library and a development framework for connecting to chemical and biological databases

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We want your feedback!

pkrog/biodb
biodb, a library and a development framework for connecting to chemical and biological databases

Files in pkrog/biodb
biodb, a library and a development framework for connecting to chemical and biological databases