MassCsvFileEntry: Mass CSV File entry class.

In pkrog/biodb: biodb, a library and a development framework for connecting to chemical and biological databases

Mass CSV File entry class.

Description

Mass CSV File entry class.

Mass CSV File entry class.

Details

This is the entry class for Mass CSV file databases.

Super classes

biodb::BiodbEntry -> biodb::BiodbCsvEntry -> MassCsvFileEntry

Methods

Public methods

• MassCsvFileEntry$new()

• MassCsvFileEntry$clone()

Inherited methods

• biodb::BiodbEntry$appendFieldValue()
• biodb::BiodbEntry$cloneInstance()
• biodb::BiodbEntry$computeFields()
• biodb::BiodbEntry$fieldHasBasicClass()
• biodb::BiodbEntry$getBiodb()
• biodb::BiodbEntry$getDbClass()
• biodb::BiodbEntry$getField()
• biodb::BiodbEntry$getFieldCardinality()
• biodb::BiodbEntry$getFieldClass()
• biodb::BiodbEntry$getFieldDef()
• biodb::BiodbEntry$getFieldNames()
• biodb::BiodbEntry$getFieldValue()
• biodb::BiodbEntry$getFieldsAsDataframe()
• biodb::BiodbEntry$getFieldsAsJson()
• biodb::BiodbEntry$getFieldsByType()
• biodb::BiodbEntry$getId()
• biodb::BiodbEntry$getName()
• biodb::BiodbEntry$getParent()
• biodb::BiodbEntry$hasField()
• biodb::BiodbEntry$isNew()
• biodb::BiodbEntry$makesRefToEntry()
• biodb::BiodbEntry$parentIsAConnector()
• biodb::BiodbEntry$parseContent()
• biodb::BiodbEntry$print()
• biodb::BiodbEntry$removeField()
• biodb::BiodbEntry$setField()
• biodb::BiodbEntry$setFieldValue()

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Method new()

New instance initializer. Entry objects must not be created directly. Instead, they are retrieved through the connector instances.

Usage

MassCsvFileEntry$new(...)

Arguments

...

All parameters are passed to the super class initializer.

Returns

Nothing.

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Method clone()

The objects of this class are cloneable with this method.

Usage

MassCsvFileEntry$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

See Also

Super class BiodbCsvEntry.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Get path to LCMS database example file
lcmsdb <- system.file("extdata",
                      "massbank_extract_lcms_2.tsv", package="biodb")

# Create a connector
conn <- mybiodb$getFactory()$createConn('mass.csv.file', url=lcmsdb)

# Get an entry
e <- conn$getEntry('PR010001')

# Terminate instance.
mybiodb$terminate()

pkrog/biodb documentation built on Nov. 29, 2022, 4:24 a.m.