summary-omicsData: Produce a basic summary of a pmartR omicsData S3 Object

In pmartR/pmartRqc: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Produce a basic summary of a pmartR omicsData S3 Object

Description

This function will provide basic summary statistics for omicsData objects from the pmartR package.

Usage

## S3 method for class 'pepData'
summary(object, ...)

## S3 method for class 'proData'
summary(object, ...)

## S3 method for class 'lipidData'
summary(object, ...)

## S3 method for class 'metabData'
summary(object, ...)

## S3 method for class 'nmrData'
summary(object, ...)

## S3 method for class 'seqData'
summary(object, ...)

Arguments

object	an object of the class 'lipidData', 'metabData', 'pepData', 'proData', nmrData', or 'seqData' usually created by as.lipidData, as.metabData, as.pepData, as.proData, as.nmrData, or as.seqData, respectively.
...	further arguments passed to or from other methods.

Value

a summary table for the pmartR omicsData object. If assigned to a variable, the elements of the summary table are saved in a list format.

Author(s)

Lisa Bramer, Kelly Stratton, Thomas Johansen

Examples

library(pmartRdata)
pep_summary <- summary(pep_object)
iso_summary <- summary(isobaric_object)
pro_summary <- summary(pro_object)
metab_summary <- summary(metab_object)
lipid_summary <- summary(lipid_neg_object)
nmr_summary <- summary(nmr_identified_object)
rnaseq_summary <- summary(rnaseq_object)

pmartR/pmartRqc documentation built on April 25, 2024, 6:18 a.m.