Man pages for pmartR/pmartRqc
Panomics Marketplace - Quality Control for Panomics Data

all_subsetIdentifies the 'subset' of All Features
anova_filterIdentifies biomolecules to be filtered in preparation for...
applyFiltApply a S3 filter object to an MSomics S3 object
as.lipidDataConvert Data to Appropriate pmartR Class
as.metabDataConvert Data to Appropriate pmartR Class
as.pepDataConvert Data to Appropriate pmartR Class
as.proDataConvert Data to Appropriate pmartR Class
bpquant_loopApplies bpquant_mod function to each unique protein in...
bpquant_modbpquant_mod function
cor_resultCorrelation matrix of biomolecule data
custom_filterCustom Filter
cv.calcCalculate the Coefficient of Variation (CV)
cv_filterFilter Based on Pooled Coefficient of Variation (CV) Values
dim_reductionReduce Dimension of Data for Exploratory Data Analysis
edata_replaceReplace Values Equal to x with y
edata_transformApply a Transformation to the Data
get_comparisonsReturn comparisons of statRes object
group_designationCreates Data Frame for Group Membership Based on Specified...
gtest_filterIdentifies peptides to be filtered out in preparation for...
helloHello, World!
imdanova_filterIMD-ANOVA filter object
losIdentify Features from the Top L Order Statistics
mad_transformMedian Absolute Deviation Transformation
mean_centerMean Center Transformation
median_centerMedian Center Transformation
missingval_heatmapProduces a heatmap of missing data
missingval_resultCreates an object of class naRes
missingval_scatterplotProduces a scatterplot of missing data
missingval_volcanoplotProduces a volcano plot from statRes object
molecule_filterMolecule filter object
MSomics_filter_workerRemove items that need to be filtered out
nonmissing_per_groupComputes the Number of Non-Missing Data Points by Group
normalizeCalculate Normalization Parameters
plot-naResPlots an object of class naRes
plot-pmartRProduce a plot of a pmartR S3 Object
plot-pmartR-corResplot.corRes
plot-pmartR-customFiltplot.customFilt
plot-pmartR-cvFiltplot.cvFilt
plot-pmartR-dimResplot.dimRes
plot-pmartR-imdanovaFiltplot.imdanovaFilt
plot-pmartR-lipidDataplot.lipidData
plot-pmartR-metabDataplot.metabData
plot-pmartR-moleculeFiltplot.moleculeFilt
plot-pmartR-normResplot.normRes
plot-pmartR-pepDataplot.pepData
plot-pmartR-proDataplot.proData
plot-pmartR-proteomicsFiltplot.proteomicsFilt
plot-pmartR-rmdFiltplot.rmdFilt
pmartRqcMy package
pppIdentify Proportion of the Peptides Present (PPP)...
ppp_ripIdentify Proportion of Peptides Present (PPP) and Rank...
pquant_meanProtein Quantitation using Mean Peptide Abundances
pquant_medianProtein Quantitation using Median Peptide Abundances
pre_imdanova_meltCreate a Melted and Grouped Version of e_data for IMD_ANOVA...
print-customFiltprint.customFilt
print-cvFiltprint.cvFilt
print-imdanovaFiltprint.imdanovaFilt
print-lipidDataprint.lipidData
print-metabDataprint.metabData
print-moleculeFiltprint.moleculeFilt
print-normResprint.normRes
print-pepDataprint.pepData
print-proDataprint.proData
print-proteomicsFiltprint.proteomicsFilt
print-rmdFiltprint.rmdFilt
protein_quantprotein_quant wrapper function
proteomics_filterProteomics filter object
ripIdentify Rank-Invariant Peptides
rmd_conversionConversion between log2(RMD) and p-value
rmd_filterRMD Runs
rrollupApplies rrollup function
run_group_meancorCalculate the Mean Correlation of a Sample with Respect to...
run_kurtosisCalculate the Kurtosis of Sample Runs
run_madCalculate the Median Absolute Deviance (MAD) of Sample Runs
run_prop_missingCalculate the Fraction of Missing Data of Sample Runs
run_skewnessCalculate the Skewness of Sample Runs
summary-mintRProduce a basic summary of an mintR S3 Object
surv_designationCreate a "surv_DF" attribute so that survival analysis can be...
vector_replaceReplace x with y for a single vector
zscore_transformZ-Score Transformation
pmartR/pmartRqc documentation built on Dec. 9, 2017, 8:20 p.m.