Files in pmartR/pmartRqc
Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.txt
NAMESPACE
R/MSnSet2pepData.R R/RcppExports.R R/analysis_log.R R/anova_filter.R R/anova_helper_fun.R R/anova_pure_R.R R/anova_test.R R/applyFilt.R R/as.isobaricpepData.R R/as.lipidData.R R/as.metabData.R R/as.pepData.R R/as.proData.R R/bpquant_loop.R R/bpquant_mod.R R/cor_result.R R/covariate_supp_funs.R R/custom_filter.R R/cv_filter.R R/dim_reduction.R R/edata_replace.R R/edata_summary.R R/edata_transform.R R/g_test.R R/get_comparisons.R R/group_comparison.R R/group_designation.R R/gtest_filter.R R/helper_fn.R R/imd_anova.R R/imd_pure_R.R R/imd_test.R R/imdanova_filter.R R/missingval_heatmap.R R/missingval_result.R R/missingval_scatterplot.R R/missingval_volcanoplot.R R/molecule_filter.R R/nonmissing_per_group.R R/norm_funcs.R R/normalize_global.R R/normalize_isobaric.R R/normalize_loess.R R/normalize_quantile.R R/p_value_adjustment.R R/paired_supp_funs.R R/plot_dataRes.R R/plot_isobaricnormRes.R R/plot_missingval.R R/plot_pmartR.R R/pmartR.R R/pquant_mean.R R/pquant_median.R R/pre_imdanova_melt.R R/print_data_objects.R R/print_filter_objects.R R/protein_quant.R R/proteomics_filter.R R/qrollup.R R/report_dataRes.R R/rmd_conversion.R R/rmd_filter.R R/rrollup.R R/statRes_class.R R/subset_funcs.R R/summary_isobaricnormRes.R R/summary_pmartR.R R/support_p_adjustment.R R/surv_designation.R R/survival.R R/test_normalization.R R/write_stat_results.R R/write_stat_results_omics.R R/zrollup.R README.md
_pkgdown.yml
data/myobject.rda
disclaimer.txt
docs/articles/Quality_Control_with_pmartR.html
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docs/reference/MSnSet2pepData.html
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inst/doc/MSomicsQC_Vignette.R inst/doc/MSomicsQC_Vignette.Rmd
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inst/doc/pmartRqc_Vignette.R inst/doc/pmartRqc_Vignette.Rmd
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inst/paired_data_for_test.RData
man/MSnSet2pepData.Rd man/all_subset.Rd man/analysis_log.Rd man/anova_filter.Rd man/anova_test.Rd man/applyFilt.Rd man/as.isobaricpepData.Rd man/as.lipidData.Rd man/as.metabData.Rd man/as.pepData.Rd man/as.proData.Rd man/bpquant_loop.Rd man/bpquant_mod.Rd man/cor_result.Rd man/custom_filter.Rd man/cv.calc.Rd man/cv_filter.Rd man/dim_reduction.Rd man/edata_replace.Rd man/edata_summary.Rd man/edata_transform.Rd man/fit_surv.Rd man/g_test.Rd man/get_comparisons.Rd man/get_data_norm.Rd man/get_data_scale.Rd man/get_edata_cname.Rd man/get_emeta_cname.Rd man/get_fdata_cname.Rd man/get_filters.Rd man/get_group_info.Rd man/get_group_table.Rd man/get_isobaric_norm.Rd man/getchecknames.Rd man/group_comparison_anova.Rd man/group_designation.Rd man/gtest_filter.Rd man/hello.Rd man/imd_anova.Rd man/imd_test.Rd man/imdanova_filter.Rd man/los.Rd man/mad_transform.Rd man/mean_center.Rd man/median_center.Rd man/missingval_heatmap.Rd man/missingval_result.Rd man/missingval_scatterplot.Rd man/missingval_volcanoplot.Rd man/molecule_filter.Rd man/nonmissing_per_group.Rd man/normalize_global.Rd man/normalize_isobaric.Rd man/normalize_loess.Rd man/normalize_quantile.Rd man/p_adjustment_anova.Rd man/plot-dataRes.Rd man/plot-isobaricnormRes.Rd man/plot-naRes.Rd man/plot-pmartR-corRes.Rd man/plot-pmartR-customFilt.Rd man/plot-pmartR-cvFilt.Rd man/plot-pmartR-dimRes.Rd man/plot-pmartR-imdanovaFilt.Rd man/plot-pmartR-lipidData.Rd man/plot-pmartR-metabData.Rd man/plot-pmartR-moleculeFilt.Rd man/plot-pmartR-normRes.Rd man/plot-pmartR-pepData.Rd man/plot-pmartR-proData.Rd man/plot-pmartR-proteomicsFilt.Rd man/plot-pmartR-rmdFilt.Rd man/plot-pmartR.Rd man/plot.statRes.Rd man/plot_km.Rd man/pmartR.Rd man/pmartR_filter_worker.Rd man/ppp.Rd man/ppp_rip.Rd man/pquant_mean.Rd man/pquant_median.Rd man/pre_imdanova_melt.Rd man/print-customFilt.Rd man/print-cvFilt.Rd man/print-dataRes.Rd man/print-imdanovaFilt.Rd man/print-lipidData.Rd man/print-metabData.Rd man/print-moleculeFilt.Rd man/print-normRes.Rd man/print-pepData.Rd man/print-proData.Rd man/print-proteomicsFilt.Rd man/print-rmdFilt.Rd man/protein_quant.Rd man/proteomics_filter.Rd man/qrollup.Rd man/report_dataRes.Rd man/rip.Rd man/rmd_conversion.Rd man/rmd_filter.Rd man/rrollup.Rd man/run_group_meancor.Rd man/run_kurtosis.Rd man/run_mad.Rd man/run_prop_missing.Rd man/run_skewness.Rd man/setchecknames.Rd man/statRes-class.Rd man/statRes_output.Rd man/summary-isobaricnormRes.Rd man/summary-pmartR.Rd man/summary_km.Rd man/surv_designation.Rd man/test_normalization.Rd man/vector_replace.Rd man/write_stat_results.Rd man/write_stat_results_omics.Rd man/zrollup.Rd man/zscore_transform.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/anova_helper_funs.cpp
src/count_missing_cpp.cpp
src/covariate_funs.cpp
src/fc_functions.cpp
src/group_comparisons.cpp
src/gtest_helper_funs.cpp
src/holm_adjustment.cpp
src/kw_rcpp.cpp
src/nonmissing_per_grp.cpp
src/pooled_cv_rcpp.cpp
src/rcpp_hello_world.cpp
src/tukey_helper.cpp
src/two_factor_anova.cpp
tests/testthat.R tests/testthat/test_anova.R tests/testthat/test_cv_filter_pmartR_Iobani.R tests/testthat/test_data.R tests/testthat/test_imd_anova.R tests/testthat/test_nonmissing_per_group_pmartR_Iobani.R tests/testthat/test_plot_final_pmartR.R tests/testthat/test_ppp_rip_pmartR_Iobani.R tests/testthat/test_protein_quant.R tests/testthat/test_rip_pmartR_Iobani.R tests/testthat/test_summary_final_pmartR.R vignettes/Quality_Control_with_pmartR.Rmd
vignettes/Quality_Control_with_pmartR.html
vignettes/Statistical_Analysis_with_pmartR.Rmd
vignettes/WorkflowFigure.png
vignettes/analysis_log.Rmd
vignettes/analysis_log.html
vignettes/bibliography.bib
vignettes/modify_mathjax.html
vignettes/pmartR_graphic-final.jpg
vignettes/pmartR_logo_final.jpg
vignettes/pmartRstat_lit.bib
pmartR/pmartRqc documentation built on Aug. 29, 2018, 10:28 p.m.