summary_km: Basic survival analysis summary

In pmartR/pmartRqc: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Basic survival analysis summary

Description

Implements overall survival analysis or progression-free survival analysis, depending upon the datatypes supplied to surv_designation, and gives a summary of the results.

Usage

summary_km(omicsData, percent = NULL, ...)

Arguments

omicsData	A pmartR data object of any class, which has a 'group_df' attribute that is usually created by the 'group_designation()' function
percent	The percentile
...	extra arguments passed to regexpr if pattern is specified

Value

if 'percent' is provided then the time at which that probability of death is returned; else, the summary of the 'survival' object is returned

Examples

## Not run: 
library(OvarianPepdataBP)
attr(tcga_ovarian_pepdata_bp, "survDF") <- list(t_death = "survival_time",
                                                ind_death = "vital_status")
# No percent is provided so the entire object is returned
summary_km(tcga_ovarian_pepdata_bp)

# Percent is provided so corresponding time point is returned
summary_km(tcga_ovarian_pepdata_bp, .4)

## End(Not run)

pmartR/pmartRqc documentation built on March 4, 2024, 3:46 p.m.