summary-pmartR-results: Summary of pmartR Analysis Functions

In pmartR/pmartRqc: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Summary of pmartR Analysis Functions

Description

Provide basic summaries for results objects from the pmartR package.

Usage

## S3 method for class 'normRes'
summary(object, ...)

## S3 method for class 'SPANSRes'
summary(object, ...)

## S3 method for class 'dimRes'
summary(object, ...)

## S3 method for class 'corRes'
summary(object, ...)

Arguments

object	object of class corRes
...	further arguments passed to or from other methods.

Value

a summary table or list for the pmartR results object

Author(s)

Lisa Bramer, Kelly Stratton, Thomas Johansen

Examples

library(pmartRdata)
mypep <- group_designation(omicsData = pep_object, main_effects = "Phenotype")
mypep <- edata_transform(omicsData = mypep, data_scale = "log2")

norm_result <- normalize_global(omicsData = mypep, norm_fn = "median", subset_fn = "all")
summary(norm_result)


spans_results <- spans_procedure(omicsData = mypep)
summary(spans_results)


dim_results <- dim_reduction(omicsData = mypep)
summary(dim_results)

cor_results <- cor_result(omicsData = mypep)
summary(cor_results)

pmartR/pmartRqc documentation built on April 25, 2024, 6:18 a.m.