examples/ex_GetIndices_MetacellFiltering.R

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

data(Exp1_R25_pept, package="DAPARdata")
obj <- Exp1_R25_pept[seq_len(10)]
level <- GetTypeofData(obj)
pattern <- c("Missing", "Missing POV")
type <- "AtLeastOneCond"
percent <- FALSE
op <- ">="
th <- 1
indices <- GetIndices_MetacellFiltering(obj, level, pattern, type, percent, op, th)



pattern <- "Quantified"
type <- "AtLeastOneCond"
percent <- FALSE
op <- ">="
th <- 4
indices2.1 <- GetIndices_MetacellFiltering(obj, level, pattern, type, percent, op, th)

pattern <- "Quant. by direct id"
type <- "AtLeastOneCond"
percent <- FALSE
op <- ">="
th <- 3
indices2.2 <- GetIndices_MetacellFiltering(obj, level, pattern, type, percent, op, th)