examples/ex_classic1wayAnova.R
In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R
data(Exp1_R25_prot, package="DAPARdata")
obj <- Exp1_R25_prot[seq_len(1000)]
metacell.mask <- match.metacell(GetMetacell(obj), c("Missing POV", "Missing MEC"), 'protein')
indices <- GetIndices_WholeMatrix(metacell.mask, op = ">=", th = 1)
obj <- MetaCellFiltering(obj, indices, cmd = "delete")
anova_tests <- t(apply(Biobase::exprs(obj$new), 1, classic1wayAnova,
conditions = as.factor(Biobase::pData(obj$new)$Condition)
))
prostarproteomics/DAPAR documentation built on March 28, 2024, 4:44 a.m.
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data(Exp1_R25_prot, package="DAPARdata")
obj <- Exp1_R25_prot[seq_len(1000)]
metacell.mask <- match.metacell(GetMetacell(obj), c("Missing POV", "Missing MEC"), 'protein')
indices <- GetIndices_WholeMatrix(metacell.mask, op = ">=", th = 1)
obj <- MetaCellFiltering(obj, indices, cmd = "delete")
anova_tests <- t(apply(Biobase::exprs(obj$new), 1, classic1wayAnova,
conditions = as.factor(Biobase::pData(obj$new)$Condition)
))
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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