buildRawDiagShinyApp: Build the rawDiag shiny application
In protViz/rawDiag: Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

buildRawDiagShinyApp

R Documentation

Build the rawDiag shiny application

Description

Build the rawDiag shiny application

Usage

buildRawDiagShinyApp(rawDir = (dirname(rawrr::sampleFilePath())))

Arguments

rawDir

A directory containing the input raw files, default is set to the $HOME/Downloads directory.

Value

returns the rawDiag shiny apps

Note

launch the shiny application by embracing your command line while expecting the raw file in $HOME/Downloads

MacOSX and Linux: ⁠R -q -e "library(rawDiag); buildRawDiagShinyApp() |> shiny::runApp(launch.browser = TRUE)"⁠
Microsoft Windows: ⁠R.exe -e "library(rawDiag); buildRawDiagShinyApp() |> shiny::runApp(launch.browser = TRUE)"⁠

Author(s)

Christian Trachsel (2017), Christian Panse (2023)

References

rawDiag: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.8b00173")},
rawrr: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.0c00866")}

Examples


rawrr::sampleFilePath() |>
  dirname() |>
  rawDiag::buildRawDiagShinyApp() |>
  shiny::runApp()
  
 # or use your 'Download' folder
 (Sys.getenv('HOME') |>
   file.path("Downloads")) |>
   rawDiag::buildRawDiagShinyApp() |>
   shiny::runApp()

protViz/rawDiag documentation built on April 29, 2024, 2:25 a.m.