plotInjectionTime: Plot Injection Time
In protViz/rawDiag: Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful
plotInjectionTime R Documentation
Plot Injection Time
Description
shows the injection time density of each mass spectrometry file as a violin
plot. The higher the maximum number of MS2 scans is in the method,
the more the density is shifted towards the maximum injection time value.
Usage
plotInjectionTime(x, method = "trellis")
Arguments
x
a data.frame object adhering to the specified criteria for
the is.rawDiag function.
method
specifying the plot method 'trellis' | 'violin' | 'overlay'.
The default is 'trellis'.
Value
a ggplot object.
Author(s)
Christian Trachsel (2017), Christian Panse (2023)
References
rawDiag: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.8b00173")},
rawrr: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.0c00866")}
Examples
rawrr::sampleFilePath() |> readRaw() |> plotInjectionTime()
protViz/rawDiag documentation built on May 4, 2024, 5:35 a.m.
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| plotInjectionTime | R Documentation |
Plot Injection Time
Description
shows the injection time density of each mass spectrometry file as a violin plot. The higher the maximum number of MS2 scans is in the method, the more the density is shifted towards the maximum injection time value.
Usage
plotInjectionTime(x, method = "trellis")
Arguments
x |
a |
method |
specifying the plot method 'trellis' | 'violin' | 'overlay'. The default is 'trellis'. |
Value
a ggplot object.
Author(s)
Christian Trachsel (2017), Christian Panse (2023)
References
rawDiag: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.8b00173")},
rawrr: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.0c00866")}
Examples
rawrr::sampleFilePath() |> readRaw() |> plotInjectionTime()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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