plotCycleLoad: Cycle Load Plot

In protViz/rawDiag: Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

Cycle Load Plot

Description

plotting the number of MS2 per MS1 (the duty cycle) scan versus retention time. The deepskyblue colored loess curve shows the trend.

Usage

plotCycleLoad(x, method = "trellis")

Arguments

x	a data.frame object adhering to the specified criteria for the is.rawDiag function.
method	specifying the plot method 'trellis' | 'violin' | 'overlay'. The default is 'trellis'.

Value

a ggplot object.

Author(s)

Christian Trachsel (2017), Christian Panse (2023)

References

• rawDiag: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.8b00173")},

• rawrr: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.0c00866")}

Examples

rawrr::sampleFilePath() |> rawDiag::readRaw() -> S

 S|> plotCycleLoad()

protViz/rawDiag documentation built on May 4, 2024, 5:35 a.m.